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glinvci

Phylogenetic Comparative Methods with Uncertainty Estimates

v1.2.4 · Apr 18, 2024 · GPL-3

Description

A framework for analytically computing the asymptotic confidence intervals and maximum-likelihood estimates of a class of continuous-time Gaussian branching processes defined by Mitov V, Bartoszek K, Asimomitis G, Stadler T (2019) <doi:10.1016/j.tpb.2019.11.005>. The class of model includes the widely used Ornstein-Uhlenbeck and Brownian motion branching processes. The framework is designed to be flexible enough so that the users can easily specify their own sub-models, or re-parameterizations, and obtain the maximum-likelihood estimates and confidence intervals of their own custom models.

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Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies optimx lbfgsb3c BB ape numDeriv plyr rlang generics glinvci

Version History

new 1.2.4 Mar 10, 2026
updated 1.2.4 ← 1.2.2 diff Apr 17, 2024
updated 1.2.2 ← 1.2.1 diff Dec 9, 2023
updated 1.2.1 ← 1.1.21 diff Aug 23, 2023
updated 1.1.21 ← 1.1.20 diff Nov 29, 2022
updated 1.1.20 ← 1.1.18 diff Nov 15, 2022
updated 1.1.18 ← 1.1.17 diff Mar 15, 2022
updated 1.1.17 ← 1.1.16 diff Jan 6, 2022
updated 1.1.16 ← 1.1.4 diff Dec 20, 2021
new 1.1.4 Sep 21, 2021