R Observatory: Metrics for ggseqlogo version 0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ggseqlogo

0.2.2

A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

4packages depend

99.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Omar WagihFirst published 2017-06-134 releasesCRAN page ↗GitHub ↗

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ggseqlogo", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("omarwagih/ggseqlogo")

Development version from omarwagih/ggseqlogo. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ggseqlogo

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ggseqlogo

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ggseqlogo

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.3 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

1

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 97%
Return-value docs: 0%
References docs: 0%

Downloads

99.2K

CRAN downloads in the past year

Rank #1,519 · ~272/day · ~8.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

4.8K30 days

18.1K90 days

99.2K1 year

Compare downloads with other packages →

Also on445 r2u17 autocran4.6K conda_forge23 c2d4u

Repository

GitHub ↗ omarwagih/ggseqlogo

230Stars

32Forks

26Open issues

5Open PRs

0Releases

40Commits

4Contributors

40 commits · Last activity 2026-02-14 · 0% stars, 30d

Stars over time

2025-08-13 · 2142026-07-16 · 230

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/omarwagih/ggseqlogo on 2026-08-09.

Continuous integration (1)

Travis CI

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (1)

ggplot2

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

4direct

0indirect

ClusTCR2 Signac immunarch phangorn

Code & Tests

People & History

People (1)

Maintainer (1)

Omar Wagih

Author, Maintainer

Authors (1)

Omar Wagih

Author, Maintainer

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.2.2Latest
2025-12-22 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.2
2024-02-09 · diff ↗
unarchivedReturned to CRAN
2024-02-09
archivedRemoved from CRAN
2023-11-27
email to the maintainer was undeliverable
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.1
2017-07-25 · diff ↗
0.0.1
2017-06-13
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-06-13
Total releases: 4 / 9 yrs
License: LGPL
Bundled data: 9.2 KB / 1 file
Download size: 723 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ggseqlogo")

Format

Wagih, O. (2025). ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos (Version 0.2.2) [Computer software]. https://doi.org/10.32614/CRAN.package.ggseqlogo

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ggseqlogo version 0.2.2 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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