R Observatory: Metrics for genoPlotR version 0.8.11

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

genoPlotR

0.8.11Package record

Plot Publication-Grade Gene and Genome Maps

0packages depend

6.7Kdownloads / year

–test coverage

0/13flavors OK

Overview

About

Maintained by Lionel GuyCRAN page ↗Website ↗

Draws gene or genome maps and comparisons between these, in a publication-grade manner. Starting from simple, common files, it will draw postscript or PDF files that can be sent as such to journals.

Changes in 0.8.11

Small fix:

Replaced calls to order() on data.frames by do.call(order, list=...) to comply with the latest R developments.

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("genoPlotR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genoplotr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-genoPlotR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-genoPlotR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) barto.Rd:15-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:19-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:23-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:19-20: Lost braces in \itemize; meant \describe ?

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Lionel Guy <lionel.guy@imbim.uu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lionel",
                    family = "Guy",
                    role = c("aut", "cre"),
                    email = "lionel.guy@imbim.uu.se")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

CRAN check page ↗

Slowest check: 2.1 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTENow
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8.11

READMENoVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.8.11Citation fileYes · cites a publicationWebsiteYes

Help pages: 21includes a package overview page
Examples that run: 100%21 run in a plain check
Exported functions with examples: 100%
Documented parameters: 96%
Return-value docs: 100%
Help pages citing references: 29%

Vignettes (1)

Getting started with genoPlotR PDF

How these are measured

Downloads

6.7K

CRAN downloads in the past year

Rank #6,074 · ~18/day · ~556/mo

Releases R versions

Daily download trend is not available in this view yet.

55530 days

1.4K90 days

6.7K1 year

Compare downloads with other packages →

Also on103 r2u6 autocran45 c2d4u

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing genoPlotR adds 5 packages (4 with compiled code, 10 MB of source tarballs). Heaviest: sp 4.3 MB, ade4 3.2 MB, Rcpp 1.8 MB.

Depends (3)

R >= 2.10.0ade4grid

Imports (1)

methods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Lionel Guy

Maintainer since 0.4 (2009)

Releases (15)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.8.11Latest
record
2021-01-07 · current release · diff ↗
0.8.10
record
2020-12-10 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.8.9
record
2019-01-25 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.8.7
record
2017-11-06 · diff ↗
unarchivedReturned to CRAN
2017-05-16
0.8.6
record
2017-05-16 · diff ↗
archivedRemoved from CRAN
2017-04-24
check errors were not corrected despite reminders

Show 20 earlier eventsHide 20 earlier events

R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.8.4
record
2015-07-08 · diff ↗
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
0.8.2
record
2013-12-23 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.8
record
2012-06-25 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
0.7
record
2011-05-03 · diff ↗ ·
added 5 exports
seg_plot, is.seg_plot, as.seg_plot, trim.seg_plot, auto_annotate
R
R 2.13.0 released · 2011-04-13
0.6.1
record
2011-03-31 · diff ↗
0.6
record
2011-03-24 · diff ↗ ·
added 1 export
artemisColors
R
R 2.12.0 released · 2010-10-15
0.5.4
record
2010-09-22 · diff ↗ ·
added 1 export
read_dna_seg_from_fasta
0.5.1
record
2010-08-16 · diff ↗
0.5
record
2010-06-24 · diff ↗
0.4
record
2010-05-19
R
R 2.11.0 released · 2010-04-22

Package metadata

First published: 2010-05-19
Total releases: 15 / 16 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10.0
Bundled data: 252 KB / 4 files
Download size: 945 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("genoPlotR")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for genoPlotR version 0.8.11 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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