R Observatory: Metrics for gaawr2 version 0.0.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gaawr2

0.0.8

Genetic Association Analysis

0packages depend

3.3Kdownloads / year

100.0%test coverage

13/13checks pass

Overview

About

Maintained by Jing Hua ZhaoFirst published 2025-02-215 releasesCRAN page ↗GitHub ↗

This is a companion to Henry-Stewart talk by Zhao (2026, doi:10.69645/FRFQ9519), which gathers information, metadata and scripts to showcase modern genetic analysis -- ranging from testing of polymorphic variant(s) for Hardy-Weinberg equilibrium, association with traits using genetic and statistical models, Bayesian implementation, power calculation in study design, and genetic annotation. It also covers R integration with the Linux environment, GitHub, package creation and web applications. The earlier version by Zhao (2009, doi:10.69645/DCRY5578) provides a brief introduction to these topics.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gaawr2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jinghuazhao/gaawr2")

Development version from jinghuazhao/gaawr2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gaawr2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gaawr2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gaawr2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

100.0%

Coverage · measured lines

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

NOTE2026-03-11
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
11 OK · 1 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 143 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 25%

Downloads

3.3K

CRAN downloads in the past year

Rank #8,148 · ~9/day · ~279/mo

Releases R versions

Daily download trend is not available in this view yet.

20230 days

1.1K90 days

3.3K1 year

Compare downloads with other packages →

Also on114 r2u17 autocran

Repository

GitHub ↗ jinghuazhao/gaawr2

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-23

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/jinghuazhao/gaawr2 on 2026-08-16.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

30 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (6)

dplyr gap gap.datasets ggplot2survivalRdpack

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Jing Hua Zhao

Author, Maintainer

Authors (1)

Jing Hua Zhao

Author, Maintainer

Contributors (2)

Benjamin Altmann

Contributor

Brian Ripley

Contributor · added in 0.0.3

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

0.0.8Latest
2026-06-17 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.0.7
2026-03-10 · diff ↗
0.0.5
2026-01-30 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.0.3
2025-03-24 · diff ↗
0.0.2
2025-02-21
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-02-21
Total releases: 5 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 62 KB / 3 files
Download size: 400 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gaawr2")

Format

Zhao, J. H., Altmann, B., & Ripley, B. (2026). gaawr2: Genetic Association Analysis (Version 0.0.8) [Computer software]. https://doi.org/10.32614/CRAN.package.gaawr2

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gaawr2 version 0.0.8 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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