R Observatory: Metrics for funspace version 0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

funspace

0.2.2

Creating and Representing Functional Trait Spaces

0packages depend

3.8Kdownloads / year

1.4%test coverage

13/13checks pass

Overview

About

Maintained by Carlos P. CarmonaFirst published 2023-03-084 releasesCRAN page ↗

Estimation of functional spaces based on traits of organisms. The package includes functions to impute missing trait values (with or without considering phylogenetic information), and to create, represent and analyse two dimensional functional spaces based on principal components analysis, other ordination methods, or raw traits. It also allows for mapping a third variable onto the functional space. See 'Carmona et al. (2021)' doi:10.1038/s41586-021-03871-y, 'Puglielli et al. (2021)' doi:10.1111/nph.16952, 'Carmona et al. (2021)' doi:10.1126/sciadv.abf2675, 'Carmona et al. (2019)' doi:10.1002/ecy.2876 for more information.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("funspace", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-funspace

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-funspace

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-funspace

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.01

1.4%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 33%

Downloads

3.8K

CRAN downloads in the past year

Rank #10,901 · ~10/day · ~313/mo

Releases R versions

Daily download trend is not available in this view yet.

31830 days

89590 days

3.8K1 year

Compare downloads with other packages →

Also on116 r2u16 autocran

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (10)

ade4 ape ksmgcvmissForestMASSparan vegan phytools viridis

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Carlos P. Carmona

Maintainer

Authors (2)

Nicola Pavanetto

Author

Giacomo Puglielli

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.2.2Latest
2024-06-17 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
0.2.1
2024-02-13 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.1
2023-03-14 · diff ↗
0.1.0
2023-03-08
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-03-08
Total releases: 4 / 3 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 1.2 MB / 5 files
Download size: 1.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("funspace")

Format

Carmona, C. P., Pavanetto, N., & Puglielli, G. (2024). funspace: Creating and Representing Functional Trait Spaces (Version 0.2.2) [Computer software]. https://doi.org/10.32614/CRAN.package.funspace

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for funspace version 0.2.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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