R Observatory: Metrics for erah version 2.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

erah

2.2.0

Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics

0packages depend

3.2Kdownloads / year

0.6%test coverage

13/13checks pass

Overview

About

Maintained by Xavier Domingo-AlmenaraFirst published 2016-04-1512 releasesCRAN page ↗GitHub ↗

Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. Outputs a table with compound names, matching scores and the integrated area of the compound for each sample. Package implementation is described in Domingo-Almenara et al. (2016) doi:10.1021/acs.analchem.6b02927.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("erah", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("xdomingoal/erah-devel")

Development version from xdomingoal/erah-devel. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-erah

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-erah

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-erah

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.2 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.01

0.6%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 17%
Documented parameters: 100%
Return-value docs: 34%
References docs: 32%

Downloads

3.2K

CRAN downloads in the past year

Rank #12,150 · ~9/day · ~270/mo

Releases R versions

Daily download trend is not available in this view yet.

22830 days

81890 days

3.2K1 year

Compare downloads with other packages →

Also on402 r2u3 autocran914 bioconda25 c2d4u

Repository

GitHub ↗ xdomingoal/erah-devel

6Stars

6Forks

10Open issues

0Open PRs

0Releases

224Commits

3Contributors

License GPL-3.0 · 224 commits · Last activity 2024-02-09

Stars over time

2025-05-30 · 62026-07-07 · 6

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/xdomingoal/erah-devel on 2026-08-16.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (10)

Rcpp osd HiClimR igraph signal quantregmethodstibble progress furrr

LinkingTo (1)

Rcpp

Suggests (9)

ncdf4 mzR future knitr rmarkdown prettydoc covr gcspikelite testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (8)

Maintainer (1)

Xavier Domingo-Almenara

Author, Maintainer, Copyright holder

Authors (6)

Xavier Domingo-Almenara

Author, Maintainer, Copyright holder

Jesus Brezmes

Author, Thesis advisor

Alexandre Perera

Author, Thesis advisor

Sara Samino

Author

Maria Vinaixa

Author

Oscar Yanes

Author, Thesis advisor

Contributors (2)

Jasen P. Finch

Contributor · added in 1.1.1

Adria Olomi

Contributor · added in 2.0.0

Copyright holders (1)

Xavier Domingo-Almenara

Author, Maintainer, Copyright holder

Listed in earlier versions (4)

Xavier Correig

no longer listed · 1.0.0 to 1.0.1

Marta Diaz

no longer listed · 1.0.0 to 1.0.1

Lourdes Ibanez

no longer listed · 1.0.0 to 1.0.1

Finch

no longer listed · 2.2.0

Package Timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.2.0Latest
2025-07-18 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.0.1
2023-12-20 · diff ↗
unarchivedReturned to CRAN
2023-12-20
archivedRemoved from CRAN
2023-12-18
issues were not corrected in time Uses Suggested package unconditionally
2.0.0
2023-12-02 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.2
2021-05-11 · diff ↗
1.1.1
2020-07-06 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.1.0
2018-07-11 · diff ↗

Show 10 earlier events

R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0.5
2017-01-14 · diff ↗
1.0.4
2016-10-18 · diff ↗
1.0.3
2016-10-14 · diff ↗
1.0.2
2016-09-02 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.0.1
2016-04-22 · diff ↗
1.0.0
2016-04-15
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2016-04-15
Total releases: 12 / 10 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0
Bundled data: 176 KB / 1 file
Download size: 738 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("erah")

Format

Domingo-Almenara, X., Brezmes, J., Finch, J. P., Olomi, A., Perera, A., Samino, S., Vinaixa, M., & Yanes, O. (2025). erah: Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics (Version 2.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.erah

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for erah version 2.2.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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