R Observatory: Metrics for epos version 1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

epos

1.2

Epilepsy Ontologies' Similarities

0packages depend

3.1Kdownloads / year

24.3%test coverage

11/13checks pass

Overview

About

Maintained by Bernd MuellerFirst published 2018-10-087 releasesCRAN page ↗GitHub ↗

Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the BioASQ corpus. The ranked result lists of neurological drug terms co-occurring with terms from the epilepsy ontologies EpSO, ESSO, EPILONT, EPISEM and FENICS undergo further analysis. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) doi:10.4126/FRL01-006408558, Mueller, Bernd et al. (2017) doi:10.1007/978-3-319-58694-6_22, Mueller, Bernd and Rebholz-Schuhmann, Dietrich (2020) doi:10.1007/978-3-030-43887-6_52, and Mueller, Bernd et al. (2022) doi:10.1186/s13326-021-00258-w.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("epos", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bernd-mueller/epos")

Development version from bernd-mueller/epos. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epos

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epos

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 2.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.07

24.3%

Coverage · measured lines

100%

Documentation · exports

11

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 313 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 66%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.1K

CRAN downloads in the past year

Rank #15,461 · ~8/day · ~254/mo

Releases R versions

Daily download trend is not available in this view yet.

19930 days

67590 days

3.1K1 year

Compare downloads with other packages →

Also on112 r2u

Repository

GitHub ↗ bernd-mueller/epos

0Stars

0Forks

0Open issues

0Open PRs

3Releases

118Commits

5Contributors

License LGPL-3.0 · 118 commits · Last activity 2025-08-29

Releases over time

2021-04-13 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/bernd-mueller/epos on 2026-08-16.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6.0

Imports (11)

hash ggplot2 testthat gridExtra TopKLists stringr xtable mongolitestatsVennDiagram cowplot

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Bernd Mueller

Author, Maintainer · added in 0.1.1

Authors (1)

Bernd Mueller

Author, Maintainer · added in 0.1.1

Listed in earlier versions (1)

Bernd Müller

no longer listed · 0.1.0

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2Latest
2025-08-29 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.1
2024-03-15 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0
2021-02-20 · diff ↗
0.1.3
2020-11-04 · diff ↗
0.1.2
2020-10-28 · diff ↗
0.1.1
2020-05-05 · diff ↗
unarchivedReturned to CRAN
2020-05-05
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-03-17
depends on archived package 'hashmap'
R
R 3.6.0 released · 2019-04-26

Show 2 earlier events

0.1.0
2018-10-08
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-10-08
Total releases: 7 / 8 yrs
License: LGPL (>= 3) OSI
Minimum R: ≥ 3.6.0
Bundled data: 211 KB / 5 files
Download size: 296 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("epos")

Format

Mueller, B. (2025). epos: Epilepsy Ontologies' Similarities (Version 1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.epos

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for epos version 1.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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