R Observatory: Metrics for ecocomDP version 1.3.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ecocomDP

1.3.2Package record

Tools to Create, Use, and Convert ecocomDP Data

0packages depend

3.9Kdownloads / year

41.4%test coverage

13/13flavors OK

Overview

About

Maintained by Colin SmithCRAN page ↗GitHub ↗Issues ↗

Work with the Ecological Community Data Design Pattern. 'ecocomDP' is a flexible data model for harmonizing ecological community surveys, in a research question agnostic format, from source data published across repositories, and with methods that keep the derived data up-to-date as the underlying sources change. Described in O'Brien et al. (2021), doi:10.1016/j.ecoinf.2021.101374.

Changes in 1.3.2

Fixes

Improved ping_edi() function to gracefully handle network errors and disabled network-dependent tests to align with CRAN policies and prevent CRAN check issues. See issue #154.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("ecocomDP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("EDIorg/ecocomDP")

Development version from EDIorg/ecocomDP. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ecocomdp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ecocomDP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.0 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-09-29
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.2

READMEYes · 189 wordsVignettesYes · 5 · dynamicNEWSYes · 100% structured · mentions 1.3.2Citation fileNo

Help pages: 33 (1 internal)
Examples that run: 77%20 run in a plain check · 6 never run
Exported functions with examples: 84%
Documented parameters: 100%
Return-value docs: 97%
Help pages citing references: 0%

Vignettes (5)

How these are measured

Downloads

3.9K

CRAN downloads in the past year

Rank #8,095 · ~11/day · ~322/mo

Releases R versions

Daily download trend is not available in this view yet.

54230 days

1.1K90 days

3.9K1 year

Compare downloads with other packages →

Also on89 r2u

How downloads are counted

Repository

ediorg/ecocomdp ↗Organization: EDIorg

40Stars

16Forks

47Open issues

1Open PRs

7Releases

1,872Commits

12Commit identities

1,872 commits · Last activity 2025-06-04 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 92%
Median days to close, 50 most recently updated closed issues: 430
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-07-28 · 362026-08-01 · 40

How these are measured

PracticesBeta

9 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ediorg/ecocomdp on 2026-10-18.

Continuous integration (1)

Travis CI (config file)

Governance and community (2)

Code of conductContributing guide

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2025-06-04

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 2 practices

CRAN release process (1)

cran-comments.md

Research and citation (1)

codemeta.json

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

29 external dependencies (excludes base and recommended)

Installing ecocomDP adds 85 packages (45 with compiled code, 70 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 3.4.0

Imports (22)

RColorBrewer data.table dplyr EML emld (>= 0.5.1)geosphere ggplot2 httr lubridate magrittrmethodsneonUtilities rlang rmarkdownstatsstringr tidyrtoolsutilsuuid xml2 neonOS

LinkingTo (0)

none

Suggests (11)

knitr mime reader ritis taxize testthat worrms ggrepel usmap sf maps

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (20)

Colin Smith

Author, Maintainer since 1.0.0 (2021), Copyright holder

Margaret O'Brien

Author · added in 1.1.0

Author

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Show 9 more contributorsHide 9 contributors

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor · added in 1.2.2

Natalie Robinson

Contributor

Thilina Surasinghe

Contributor

Kyle Zollo-Venecek

Contributor · added in 1.2.0

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.3.2Latest
record
2024-08-16 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.3.1
record
2024-02-21 · diff ↗
1.2.2
record
2023-06-20 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.2.1
record
2022-03-07 · diff ↗
1.2.0
record
2021-10-19 · diff ↗ ·
removed 2 exports
view_descriptions, view_diagram

added 6 exports
annotation_dictionary, plot_sample_space_time, plot_sites, plot_taxa_abund, plot_taxa_occur_freq, plot_taxa_rank
1.1.0
record
2021-07-31 · diff ↗
1.0.0
record
2021-06-10
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-10
Total releases: 7 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.4.0
Bundled data: 52 KB / 2 files
Download size: 3.9 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ecocomDP")

Format

Smith, C., Bitters, M., Chen, M., Gonzales, S., Helmus, M., Hobart, B., Jaimes, R., Janson, L., Jarzyna, M., Just, M., Li, D., Moss, W., Norman, K., O'Brien, M., Parker, S., Rangel, R., Robinson, N., Sokol, E., Surasinghe, T., & Zollo-Venecek, K. (2024). ecocomDP: Tools to Create, Use, and Convert ecocomDP Data (Version 1.3.2) [Computer software]. https://doi.org/10.32614/CRAN.package.ecocomDP

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ecocomDP version 1.3.2 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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