duckspatial

Error(s) in re-building vignettes:
--- re-building ‘aw_interpolation.qmd’ using html
[31m

processing file: aw_interpolation.qmd
[39m[31mError in `value[[3L]]()`:
! Failed to load the spatial extension.
✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ
  Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this
  may crash R on a Linux build not compiled with libstdc++; see
  https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ
  Context: load_extension
ℹ The binary may be corrupt or incompatible with this platform/DuckDB version.
ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)`
Backtrace:
     ▆
  1. └─duckspatial::ddbs_interpolate_aw(...)
  2.   └─duckspatial:::resolve_spatial_connections(...)
  3.     └─duckspatial::ddbs_default_conn()
  4.       └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)
  5.         └─duckspatial::ddbs_load(conn, quiet = TRUE)
  6.           └─base::tryC
...[truncated]...
install(extension = 'spatial', upgrade = TRUE)`
  ---
  Backtrace:
  ▆
  1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within")
  2.  └─duckspatial:::resolve_spatial_connections(...)
  3.  └─duckspatial::ddbs_default_conn()
  4.  └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)
  5.  └─duckspatial::ddbs_load(conn, quiet = TRUE)
  6.  └─base::tryCatch(...)
  7.  └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  8.  └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  9.  └─value[[3L]](cond)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Execution halted
  [33mWARN: Error encountered when rendering files[39m
  
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘spatial_joins.qmd’

SUMMARY: processing the following files failed:
  ‘aw_interpolation.qmd’ ‘duckspatial.qmd’ ‘spatial_joins.qmd’

Error: Vignette re-building failed.
Execution halted

Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(duckspatial)
  duckspatial 1.3.0 attached
  * Compatible with DuckDB >= v1.5.6
  
  Default output has changed on v1.0.0:
    duckspatial now returns lazy `duckspatial_df` (dbplyr) objects
    instead of `sf` objects.
  
  To restore the previous behaviour:
    ddbs_options(mode = 'sf')
  > library(duckdb)
  Loading required package: DBI
  > 
  > test_check("duckspatial")
  Reading layer `countries' from data source 
    `/data/localhost/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/c
...[truncated]...
      └─base::eval(exprs, env)
   13.                       └─base::eval(exprs, env)
   14.                         ├─duckspatial::as_duckspatial_df(argentina_sf) at ./setup.R:15:1
   15.                         └─duckspatial:::as_duckspatial_df.sf(argentina_sf)
   16.                           └─duckspatial::ddbs_default_conn()
   17.                             └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)
   18.                               └─duckspatial::ddbs_load(conn, quiet = TRUE)
   19.                                 └─base::tryCatch(...)
   20.                                   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   21.                                     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   22.                                       └─value[[3L]](cond)
   23.                                         └─cli::cli_abort(...)
   24.                                           └─rlang::abort(...)
  Execution halted