R Observatory: Metrics for doolkit version 1.42.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

doolkit

1.42.2

Exploration of Dental Surface Topography

0packages depend

2.7Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Ghislain ThieryFirst published 2021-11-034 releasesCRAN page ↗

Tools for exploring the topography of 3d triangle meshes. The functions were developed with dental surfaces in mind, but could be applied to any triangle mesh of class 'mesh3d'. More specifically, 'doolkit' allows to isolate the border of a mesh, or a subpart of the mesh using the polygon networks method; crop a mesh; compute basic descriptors (elevation, orientation, footprint area); compute slope, angularity and relief index (Ungar and Williamson (2000) https://palaeo-electronica.org/2000_1/gorilla/issue1_00.htm; Boyer (2008) doi:10.1016/j.jhevol.2008.08.002), inclination and occlusal relief index or gamma (Guy et al. (2013) doi:10.1371/journal.pone.0066142), OPC (Evans et al. (2007) doi:10.1038/nature05433), OPCR (Wilson et al. (2012) doi:10.1038/nature10880), DNE (Bunn et al. (2011) doi:10.1002/ajpa.21489; Pampush et al. (2016) doi:10.1007/s10914-016-9326-0), form factor (Horton (1932) doi:10.1029/TR013i001p00350), basin elongation (Schum (1956) doi:10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2), lemniscate ratio (Chorley et al; (1957) doi:10.2475/ajs.255.2.138), enamel-dentine distance (Guy et al. (2015) doi:10.1371/journal.pone.0138802; Thiery et al. (2017) doi:10.3389/fphys.2017.00524), absolute crown strength (Schwartz et al. (2020) doi:10.1098/rsbl.2019.0671), relief rate (Thiery et al. (2019) doi:10.1002/ajpa.23916) and area-relative curvature; draw cumulative profiles of a topographic variable; and map a variable over a 3d triangle mesh.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("doolkit", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-doolkit

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-doolkit

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

3ERROR10NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
ERROR r-oldrel-macos-arm64
ERROR r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
ERROR r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 4.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

11

Dependencies · direct

Check history

ERROR2026-03-10
0 OK · 11 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE

Documentation

READMEYes · 99 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 96%
References docs: 44%

Downloads

2.7K

CRAN downloads in the past year

Rank #12,740 · ~7/day · ~222/mo

Releases R versions

Daily download trend is not available in this view yet.

25630 days

78690 days

2.7K1 year

Compare downloads with other packages →

Also on170 r2u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2.0

Imports (11)

ggplot2 igraph Morpho rgl Rvcg spMASStismethodsconcaveman usethis

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Ghislain Thiery

Author, Maintainer

Authors (3)

Ghislain Thiery

Author, Maintainer

Franck Guy

Author

Vincent Lazzari

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.42.2Latest
2023-02-06 · current release · diff ↗
1.42.1
2022-05-14 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.1
2021-11-24 · diff ↗
1.0.0
2021-11-03
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-11-03
Total releases: 4 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.2.0
Bundled data: 1.6 MB / 2 files
Download size: 3.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("doolkit")

Format

Thiery, G., Guy, F., & Lazzari, V. (2023). doolkit: Exploration of Dental Surface Topography (Version 1.42.2) [Computer software]. https://doi.org/10.32614/CRAN.package.doolkit

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for doolkit version 1.42.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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