distory

1.4.5

Distance Between Phylogenetic Histories

3packages depend

7.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Emmanuel ParadisFirst published 2012-12-106 releasesCRAN page ↗

Geodesic distance between phylogenetic trees and associated functions. The theoretical background of 'distory' is published in Billera et al. (2001) "Geometry of the space of phylogenetic trees." <doi:10.1006/aama.2001.0759>.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("distory")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-distory

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-distory

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-distory

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

13OK

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

7.4K

CRAN downloads in the past year

Rank #6,645 · ~20/day · ~617/mo

distory Releases R versions

Daily download trend is not available in this view yet.

63530 days

1.7K90 days

7.4K1 year

Compare downloads with other packages →

Also on449 r2u8 autocran2.6K conda_forge70 c2d4u

Source & community

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

ape

Imports (2)

graphicsstats

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Reverse dependencies

3direct

–indirect (not tracked)

MHD treespace pcmabc

Code & Tests

Code Composition

C++ 1,258 (49%)Rd 584 (23%)R 541 (21%)C 168 (7%)

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

36 16 exported

Complexity

4.8 avg / 29 max

Call network

36 nodes / 32 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Emmanuel Paradis

Maintainer

Authors (2)

John Chakerian

Author

Susan Holmes

Author

Release timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.4.5Latest
2024-10-07 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.4.4
2020-04-19 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.4.3
2017-03-21 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 5 earlier events

1.4.2
2013-11-12 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.4.1
2013-02-01 · diff ↗
1.4
2012-12-10
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-12-10
Total releases: 6 / 14 yrs
License: BSD_3_clause + file LICENSE OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet