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covid19.analytics

Load and Analyze Live Data from the COVID-19 Pandemic

v2.1.3.3 · Oct 15, 2023 · GPL (>= 2)

Description

Load and analyze updated time series worldwide data of reported cases for the Novel Coronavirus Disease (COVID-19) from different sources, including the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE) data repository <https://github.com/CSSEGISandData/COVID-19>, "Our World in Data" <https://github.com/owid/> among several others. The datasets reporting the COVID-19 cases are available in two main modalities, as a time series sequences and aggregated data for the last day with greater spatial resolution. Several analysis, visualization and modelling functions are available in the package that will allow the user to compute and visualize total number of cases, total number of changes and growth rate globally or for an specific geographical location, while at the same time generating models using these trends; generate interactive visualizations and generate Susceptible-Infected-Recovered (SIR) model for the disease spread.

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CRAN Check Status

5 NOTE
9 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (5 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcelo",
                      family = "Ponce",
                      role = c("aut", "cre"),
                      email = "m.ponce@utoronto.ca"),
               person(given = "Amit",
                      family = "Sandhel",
                      role = "ctb"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcelo",
                      family = "Ponce",
                      role = c("aut", "cre"),
                      email = "m.ponce@utoronto.ca"),
               person(given = "Amit",
                      family = "Sandhel",
                      role = "ctb"))
as necessary.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   2.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   2.6Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   2.6Mb

Check History

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcelo",
                      family = "Ponce",
                      role = c("aut", "cre"),
                      email = "m.ponce@utoronto.ca"),
               person(given = "Amit",
                      family = "Sandhel",
                      role = "ctb"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcelo",
                      family = "Ponce",
                      role = c("aut", "cre"),
                      email = "m.ponce@utoronto.ca"),
               person(given = "Amit",
                      family = "Sandhel",
                      role = "ctb"))
as necessary.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   2.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   2.6Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   2.6Mb

Dependency Network

Dependencies Reverse dependencies readxl ape rentrez curl plotly htmlwidgets deSolve gplots pheatmap shiny shinydashboard shinycssloaders DT dplyr collapsibleTree covid19.analytics

Version History

new 2.1.3.3 Mar 10, 2026
updated 2.1.3.3 ← 2.1.3.2 diff Oct 14, 2023
updated 2.1.3.2 ← 2.1.3.1 diff Oct 9, 2023
updated 2.1.3.1 ← 2.1.3 diff May 24, 2023
updated 2.1.3 ← 2.1.2 diff Aug 17, 2022
updated 2.1.2 ← 2.1.1 diff Apr 5, 2022
updated 2.1.1 ← 2.1 diff Sep 13, 2021
updated 2.1 ← 2.0 diff Mar 22, 2021
updated 2.0 ← 1.1.1 diff Sep 27, 2020
updated 1.1.1 ← 1.1 diff Jul 12, 2020
updated 1.1 ← 1.0.1 diff May 2, 2020
updated 1.0.1 ← 1.0 diff Apr 12, 2020
new 1.0 Apr 5, 2020