R Observatory: Metrics for clinDataReview version 1.6.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clinDataReview

1.6.2Package record

Clinical Data Review Tool

0packages depend

4.8Kdownloads / year

97.6%test coverage

11/13flavors OK

Overview

About

Maintained by Laure CougnaudCRAN page ↗GitHub ↗Issues ↗

Creation of interactive tables, listings and figures ('TLFs') and associated report for exploratory analysis of data in a clinical trial, e.g. for clinical oversight activities. Interactive figures include sunburst, treemap, scatterplot, line plot and barplot of counts data. Interactive tables include table of summary statistics (as counts of adverse events, enrollment table) and listings. Possibility to compare data (summary table or listing) across two data batches/sets. A clinical data review report is created via study-specific configuration files and template 'R Markdown' reports contained in the package.

Changes in 1.6.2

fix use of tempdir in tests
[doc] examples:
removed for non exported function
remove \dontrun: not needed
[doc] examples/vignette: do not write in working directory
[doc] knit.print: add return
[doc] vignette: remove 'options'

From inst/NEWS in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clinDataReview", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("openanalytics/clinDataReview")

Development version from openanalytics/clinDataReview. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clindatareview

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clinDataReview

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clinDataReview

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘clinDataReview-common-args-report.Rd’
  ‘clinDataReview-common-args-summaryStatsVis.Rd’
  ‘clinDataReview-common-args.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 5.1 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 1 NOTE2026-07-11
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25
NOTE11 OK, 3 NOTE2026-03-12

Show 1 earlier changeHide 1 earlier change

ERROR10 OK, 3 NOTE, 1 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.6.2

READMENoVignettesYes · 3 · evaluation depends on the environmentNEWSYes · 100% structured · mentions 1.6.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 99
Examples that run: 94%15 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 41%
Documented parameters: 95%
Return-value docs: 100%
Help pages citing references: 1%

Vignettes (3)

How these are measured

Downloads

4.8K

CRAN downloads in the past year

Rank #7,484 · ~13/day · ~398/mo

Releases R versions

Daily download trend is not available in this view yet.

50830 days

1.2K90 days

4.8K1 year

Compare downloads with other packages →

Also on85 r2u9 autocran

How downloads are counted

Repository

openanalytics/clindatareview ↗Organization: openanalytics

12Stars

7Forks

5Open issues

0Open PRs

0Releases

882Commits

7Commit identities

882 commits · Last activity 2024-06-17 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 0%
Median days to close, 50 most recently updated closed issues: 28
Median days to close, 50 most recently updated closed PRs: 33

Stars over time

2023-01-06 · 112026-07-07 · 12

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/openanalytics/clindatareview on 2026-10-18.

Continuous integration (1)

Jenkins

Reproducibility and dev environment (1)

Dockerfile

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

25 external dependencies (excludes base and recommended)

Installing clinDataReview adds 83 packages (44 with compiled code, 72 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (0)

none

Imports (24)

bookdown clinUtils crosstalk data.table ggplot2gridhaven htmltools htmlwidgets knitr jsonlite jsonvalidatemethodsplotly plyr rmarkdownstatsstringrutilstoolsyaml xml2 xfun base64enc

LinkingTo (0)

none

Suggests (7)

countrycode inTextSummaryTable patientProfilesVis testthat DT scalesgrDevices

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (6)

Laure Cougnaud

Author, Maintainer since 1.0.0 (2021)

Adriaan Blommaert

Author · added in 1.3.1

Michela Pasetto

Author

Lennart Tuijnder

Author · added in 1.1.0

Arne De Roeck

Contributor, Reviewer

rev: tests

Open Analytics

Copyright holder

Releases (13)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2025-04-12
1.6.2Latest
record
2025-04-12 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2025-03-08
issues were not corrected in time
1.6.1
record
2024-06-18 · diff ↗
1.6.0
record
2024-06-13 · diff ↗ ·
added 2 exports
addWatermark, getWatermark
1.5.2
record
2024-05-17 · diff ↗
1.5.1
record
2024-04-24 · diff ↗
R
R 4.4.0 released · 2024-04-24
unarchivedReturned to CRAN
2023-12-11
1.5.0
record
2023-12-11 · diff ↗
archivedRemoved from CRAN
2023-12-07
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
1.4.0
record
2023-02-24 · diff ↗ ·
added 1 export
convertReportToAspx
unarchivedReturned to CRAN
2022-10-10

Show 9 earlier eventsHide 9 earlier events

1.3.1
record
2022-10-10 · diff ↗ ·
removed 6 exports
addReferenceLinesClinDataPlot, checkReportTitles, convertMdToHtml, countNLines, formatDataForPlotClinData, getFctTypeReferenceLines

added 2 exports
getExtraDirs, postProcessReport
archivedRemoved from CRAN
2022-10-09
issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
1.2.2
record
2022-02-23 · diff ↗
1.2.1
record
2021-10-02 · diff ↗
1.2.0
record
2021-10-01 · diff ↗ ·
added 2 exports
countNLines, errorbarClinData
1.1.0
record
2021-07-14 · diff ↗ ·
added 1 export
boxplotClinData
1.0.0
record
2021-06-30
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-30
Total releases: 13 / 5 yrs
License: MIT + file LICENSE OSI
Download size: 1.8 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clinDataReview")

Format

Cougnaud, L., Open Analytics, Blommaert, A., De Roeck, A., Pasetto, M., & Tuijnder, L. (2025). clinDataReview: Clinical Data Review Tool (Version 1.6.2) [Computer software]. https://doi.org/10.32614/CRAN.package.clinDataReview

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clinDataReview version 1.6.2 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →