R Observatory: Metrics for cati version 0.99.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

cati

0.99.6

Community Assembly by Traits: Individuals and Beyond

0packages depend

6.6Kdownloads / year

33.1%test coverage

13/13checks pass

Overview

About

Maintained by Adrien TaudiereFirst published 2014-06-248 releasesCRAN page ↗GitHub ↗

Detect and quantify community assembly processes using trait values of individuals or populations, the T-statistics and other metrics, and dedicated null models. Provides tools to analyse 'intraspecific' trait variability and its consequences for community assembly. Implements a framework using individual-level trait data to decompose variance at the population, species, and community levels. Methods are described in 'Taudiere' and 'Violle' (2016) doi:10.1111/ecog.01433.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("cati", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("adrientaudiere/cati")

Development version from adrientaudiere/cati. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cati

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-cati

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-cati

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 10.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.05

33.1%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 7 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-08
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-07
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-04
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 115 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 73%
Documented parameters: 100%
Return-value docs: 100%
References docs: 29%

Downloads

6.6K

CRAN downloads in the past year

Rank #5,299 · ~18/day · ~553/mo

Releases R versions

Daily download trend is not available in this view yet.

30930 days

1.5K90 days

6.6K1 year

Compare downloads with other packages →

Also on117 r2u14 autocran64 c2d4u

Repository

GitHub ↗ adrientaudiere/cati

13Stars

7Forks

0Open issues

0Open PRs

2Releases

432Commits

9Contributors

License GPL-3.0 · 432 commits · Last activity 2026-07-01 · 0% stars, 30d

Stars over time

2025-01-23 · 122026-07-07 · 13

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/adrientaudiere/cati on 2026-08-09.

Continuous integration (2)

GitHub ActionsTravis CI

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (4)

R >= 3.5.0nlmeade4 ape

Imports (6)

e1071 rasterVis hypervolumeclustergeometry vegan

LinkingTo (0)

none

Suggests (7)

latticeentropart fBasics picante mice knitr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Adrien Taudiere

Author, Maintainer, Copyright holder

Authors (2)

Adrien Taudiere

Author, Maintainer, Copyright holder

Cyrille Violle

Author · added in 0.99.4

Contributors (1)

François Munoz

Contributor · added in 0.99.4

Copyright holders (1)

Adrien Taudiere

Author, Maintainer, Copyright holder

Listed in earlier versions (3)

Cyrille Violle with contribution of Francois Munoz

no longer listed · 0.8 to 0.96

Cyrille Violle with contribution by Francois Munoz

no longer listed · 0.99 to 0.99.2

Cyrille Violle with contribution by Francois Munoz [contr]

no longer listed · 0.99.3

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.99.6Latest
2026-04-01 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.99.4
2022-02-25 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.99.3
2020-03-02 · diff ↗
unarchivedReturned to CRAN
2020-03-02
R
R 3.6.0 released · 2019-04-26
archivedRemoved from CRAN
2019-02-13
maintainer's email was undeliverable when asked to correct check issues
0.99.2
2018-05-09 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21

Show 7 earlier events

R
R 3.3.0 released · 2016-05-03
0.99.1
2016-03-15 · diff ↗
0.99
2015-05-29 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.96
2015-02-13 · diff ↗
0.8
2014-06-24
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-06-24
Total releases: 8 / 12 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 19 KB / 1 file
Download size: 65 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("cati")

Format

Taudiere, A., Munoz, F., & Violle, C. (2026). cati: Community Assembly by Traits: Individuals and Beyond (Version 0.99.6) [Computer software]. https://doi.org/10.32614/CRAN.package.cati

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for cati version 0.99.6 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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