R Observatory: Metrics for c060 version 0.5-0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

c060

0.5-0Package record

Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models

0packages dependsuggested by 2

4.4Kdownloads / year

21.9%test coverage

13/13flavors OK

Overview

About

Maintained by Frederic BertrandCRAN page ↗GitHub ↗Website ↗Issues ↗

The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models.

Changes in 0.5-0

Code update to expose directly some errors to make debugging easier.
Code fixes to use calar guards
Code fix to implement backward compatibility

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("c060", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("fbertran/c060")

Development version from fbertran/c060. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-c060

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-c060

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-c060

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.2 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.5-0

READMEYes · 140 wordsVignettesNoNEWSYes · 100% structured · mentions 0.5-0Citation fileYes · cites a publicationWebsiteYes · pkgdown

Cites a JSS article

Help pages: 17 (1 internal)includes a package overview page
Examples that run: 14%1 run in a plain check · 6 never run
Exported functions with examples: 55%
Documented parameters: 99%
Return-value docs: 91%
Help pages citing references: 94%

How these are measured

Downloads

4.4K

CRAN downloads in the past year

Rank #9,491 · ~12/day · ~368/mo

Releases R versions

Daily download trend is not available in this view yet.

44930 days

1K90 days

4.4K1 year

Compare downloads with other packages →

Also on112 r2u15 autocran

How downloads are counted

Repository

fbertran/c060 ↗Account: fbertran

3Stars

0Forks

0Open issues

0Open PRs

2Releases

12Commits

1Commit identities

License file reads as GPL-3.0 · 12 commits · Last activity 2026-03-24

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 853
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2023-11-22 · 32026-07-07 · 3

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/fbertran/c060 on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-03-24

pkgdown site last built 2025-09-18, before release 0.5-0 (2026-03-24)

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing c060 adds 20 packages (11 with compiled code, 13 MB of source tarballs). Heaviest: tgp 2.8 MB, glmnet 2.7 MB, Rcpp 1.8 MB.

Depends (0)

none

Imports (11)

glmnetsurvivalparallelmlegp tgp pamr peperr penalized penalizedSVMlatticemethods

LinkingTo (0)

none

Suggests (2)

withr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 2

Suggests, most downloaded first

Patterns ePCR

How these are counted

Code & Tests

People & History

People (5)

Frederic Bertrand

Maintainer · added in 0.3-1

Natalia Becker

Author · added in 0.4-0

Thomas Hielscher

Author

Martin Sill

Author

Manuela Zucknick

Author

Maintainer since 0.2-6 (2021), previously Martin Sill (0.2 to 0.2-5)

Listed in earlier versions (1)

Natalia Becker.

no longer listed · 0.2 to 0.3-1

Releases (12)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.5-0Latest
record
2026-03-24 · current release · diff ↗
0.4-0
record
2025-09-19 · diff ↗ ·
removed 1 export
epsgo

added 2 exports
EPSGO, PLL.coxnet
0.3-1
record
2025-08-18 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.3-0
record
2023-03-23 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2-9
record
2022-03-03 · diff ↗
0.2-8
record
2021-10-06 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.2-7
record
2021-03-16 · diff ↗
0.2-6
record
2021-03-01 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.2-5
record
2019-11-29 · diff ↗

Show 10 earlier eventsHide 10 earlier events

R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.2-4
record
2014-12-11 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.2-3
record
2014-01-22 · diff ↗ ·
removed 5 exports
stability.path, stability.selection, EPSGO, my.balanced.folds, get.cofn.int.search

added 5 exports
stabpath, stabsel, epsgo, balancedFolds, Plot.coef.glmnet
0.2
record
2013-04-16
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2013-04-16
Total releases: 12 / 13 yrs
License: GPL-2 OSI
Download size: 352 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("c060")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for c060 version 0.5-0 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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