R Observatory: Metrics for airr version 2.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

airr

2.0.0

AIRR Data Representation Reference Library

3packages depend

31Kdownloads / year

67.3%test coverage

13/13checks pass

Overview

About

Maintained by Jason Vander HeidenFirst published 2018-05-038 releasesCRAN page ↗GitHub ↗

Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community https://docs.airr-community.org.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("airr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("airr-community/airr-standards")

Development version from airr-community/airr-standards. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-airr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-airr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-airr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 3.57

67.3%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 38 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 63%
References docs: 0%

Downloads

31K

CRAN downloads in the past year

Rank #2,695 · ~85/day · ~2.6K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.9K30 days

6.5K90 days

31K1 year

Compare downloads with other packages →

Also on281 r2u42 autocran4.2K conda_forge172 bioconda19 c2d4u

Repository

GitHub ↗ airr-community/airr-standards

41Stars

24Forks

42Open issues

2Open PRs

14Releases

1,723Commits

28Contributors

standardadaptiveimmunereceptors

License CC-BY-4.0 · 1,723 commits · Last activity 2026-08-11 · 0% stars, 30d

Stars over time

2025-02-20 · 372026-07-07 · 41

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/airr-community/airr-standards on 2026-08-16.

Continuous integration (2)

GitHub ActionsTravis CI

Reproducibility and dev environment (1)

Makefile

Research and citation (1)

Zenodo

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.2

Imports (7)

jsonlitemethodsreadrstatsstringitoolsyaml

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown tibble testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

7indirect

alakazam dowser immunarch

Code & Tests

People & History

People (7)

Maintainer (1)

Jason Vander Heiden

Author, Maintainer

Authors (6)

Jason Vander Heiden

Author, Maintainer

Scott Christley

Author · added in 1.3.0

Gisela Gabernet

Author · added in 1.6.1

Katharina Imkeller

Author · added in 1.4.0

Susanna Marquez

Author

Ulrik Stervbo

Author · added in 1.4.0

Copyright holders (1)

AIRR Community

Copyright holder

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.0Latest
2026-06-06 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.6.1
2026-02-18 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.5.0
2023-08-29 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.4.1
2022-08-28 · diff ↗
1.4.0
2022-08-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.3.0
2020-05-27 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.2.0
2018-08-18 · diff ↗
1.1.0
2018-05-03

Show 1 earlier events

R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-03
Total releases: 8 / 8 yrs
License: CC BY 4.0
Minimum R: ≥ 3.1.2
Download size: 393 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("airr")

Format

Vander Heiden, J., AIRR Community, Christley, S., Gabernet, G., Imkeller, K., Marquez, S., & Stervbo, U. (2026). airr: AIRR Data Representation Reference Library (Version 2.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.airr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for airr version 2.0.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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