R Observatory: Metrics for adiv version 2.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

adiv

2.2.1Package record

Analysis of Diversity

0packages depend

6.6Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Sandrine PavoineCRAN page ↗

Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("adiv", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-adiv

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-adiv

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-adiv

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Sandrine Pavoine <sandrine.pavoine@mnhn.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sandrine",
                    family = "Pavoine",
                    role = c("aut", "cre"),
                    email = "sandrine.pavoine@mnhn.fr")
as necessary.

CRAN check page ↗

Slowest check: 5.1 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-09-08
ERROR10 OK, 2 NOTE, 1 ERROR2026-09-07
NOTE11 OK, 2 NOTE2026-06-09
ERROR11 OK, 1 NOTE, 1 ERROR2026-06-08
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.2.1

READMENoVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 64includes a package overview page
Examples that run: 27%17 run in a plain check · 45 never run
Exported functions with examples: 98%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 97%

How these are measured

Downloads

6.6K

CRAN downloads in the past year

Rank #4,692 · ~18/day · ~546/mo

Releases R versions

Daily download trend is not available in this view yet.

69430 days

1.8K90 days

6.6K1 year

Compare downloads with other packages →

Also on128 r2u23 autocran502 conda_forge176 c2d4u

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing adiv adds 93 packages (55 with compiled code, 73 MB of source tarballs). Heaviest: stringi 11 MB, bslib 5.6 MB, igraph 4.8 MB.

Depends (1)

R >= 4.0

Imports (13)

ade4 adegraphics apeclustergraphicsgrDeviceslpSolvemethodsphylobase phytools rglstatsutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Sandrine Pavoine

Maintainer since 1.0 (2017)

Releases (12)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.2.1Latest
record
2024-02-19 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
2.2
record
2022-10-06 · diff ↗
2.1.2
record
2022-05-20 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.1.1
record
2021-09-27 · diff ↗
2.1
record
2021-08-21 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.0.1
record
2020-08-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.0
record
2020-02-11 · diff ↗
1.4
record
2020-01-07 · diff ↗
1.3
record
2019-10-18 · diff ↗

Show 6 earlier eventsHide 6 earlier events

R
R 3.6.0 released · 2019-04-26
1.2
record
2018-08-24 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1
record
2017-09-14 · diff ↗
1.0
record
2017-07-19
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-07-19
Total releases: 12 / 9 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0
Bundled data: 18 KB / 8 files
Download size: 185 KB

Appears in task views

Phylogenetics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("adiv")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for adiv version 2.2.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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