R Observatory: Metrics for adaptivetau version 2.3-2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

adaptivetau

2.3-2

Tau-Leaping Stochastic Simulation

3packages depend

13.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Philip JohnsonFirst published 2010-10-2015 releasesCRAN page ↗GitHub ↗

Implements adaptive tau leaping to approximate the trajectory of a continuous-time stochastic process as described by Cao et al. (2007) The Journal of Chemical Physics doi:10.1063/1.2745299 (aka. the Gillespie stochastic simulation algorithm). This package is based upon work supported by NSF DBI-0906041 and NIH K99-GM104158 to Philip Johnson and NIH R01-AI049334 to Rustom Antia.

Latest changes · 2.3-2

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("adaptivetau", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("plfjohnson/adaptivetau")

Development version from plfjohnson/adaptivetau. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-adaptivetau

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-adaptivetau

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-adaptivetau

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

0

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 97%
Return-value docs: 100%
References docs: 33%

Downloads

13.6K

CRAN downloads in the past year

Rank #4,135 · ~37/day · ~1.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

46730 days

2K90 days

13.6K1 year

Compare downloads with other packages →

Also on466 r2u57 autocran76 c2d4u

Repository

GitHub ↗ plfjohnson/adaptivetau

1Stars

0Forks

0Open issues

0Open PRs

1Releases

36Commits

2Contributors

License GPL-3.0 · 36 commits · Last activity 2024-10-29 · 0% stars, 30d

Stars over time

2026-04-30 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

Checks run against github.com/plfjohnson/adaptivetau on 2026-08-16.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10.1

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

DSAIDE DSAIRM fastbeta

Code & Tests

People & History

People (1)

Maintainer (1)

Philip Johnson

Author, Maintainer

Authors (1)

Philip Johnson

Author, Maintainer

Package Timeline

15 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.3-2Latest
2024-10-24 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
2.3-1
2024-04-17 · diff ↗
2.3
2023-11-28 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
2.2-3
2019-03-19 · diff ↗
2.2-2
2019-03-12 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
2.2-1
2016-10-25 · diff ↗

Show 17 earlier events

R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
2.2
2014-11-19 · diff ↗
2.1
2014-05-08 · diff ↗
R
R 3.1.0 released · 2014-04-10
2.0
2014-03-24 · diff ↗
1.1-1
2013-11-11 · diff ↗
1.1
2013-07-28 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.0
2012-04-10 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
0.902
2011-01-03 · diff ↗
0.901
2010-11-13 · diff ↗
0.9
2010-10-20
R
R 2.12.0 released · 2010-10-15

Package metadata

First published: 2010-10-20
Total releases: 15 / 16 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10.1
Download size: 178 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Differential Equations

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("adaptivetau")

Format

Johnson, P. (2024). adaptivetau: Tau-Leaping Stochastic Simulation (Version 2.3-2) [Computer software]. https://doi.org/10.32614/CRAN.package.adaptivetau

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for adaptivetau version 2.3-2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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