R Observatory: Metrics for DSAIRM version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DSAIRM

1.0.0

Dynamical Systems Approach to Immune Response Modeling

0packages depend

3.6Kdownloads / year

83.4%test coverage

13/13checks pass

Overview

About

Maintained by Andreas HandelFirst published 2018-08-1311 releasesCRAN page ↗GitHub ↗

Simulation models (apps) of various within-host immune response scenarios. The purpose of the package is to help individuals learn about within-host infection and immune response modeling from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DSAIRM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ahgroup/DSAIRM")

Development version from ahgroup/DSAIRM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dsairm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DSAIRM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DSAIRM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.18

83.4%

Coverage · measured lines

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 95%
Documented parameters: 100%
Return-value docs: 97%
References docs: 3%

Downloads

3.6K

CRAN downloads in the past year

Rank #10,641 · ~10/day · ~302/mo

Releases R versions

Daily download trend is not available in this view yet.

27130 days

91590 days

3.6K1 year

Compare downloads with other packages →

Also on145 r2u19 autocran

Repository

GitHub ↗ ahgroup/dsairm

34Stars

14Forks

0Open issues

0Open PRs

2Releases

575Commits

6Contributors

575 commits · Last activity 2026-07-27

Stars over time

2025-01-06 · 342026-07-07 · 34

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/ahgroup/dsairm on 2026-08-16.

Continuous integration (1)

GitHub Actions

Docs source (1)

Quarto project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (2)

R >= 4.0.0shiny

Imports (13)

adaptivetaubootdeSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlangstatsutilsXML

LinkingTo (0)

none

Suggests (8)

covr devtools emoji knitr pkgdown rmarkdown roxygen2 testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (8)

Maintainer (1)

Andreas Handel

Author, Maintainer

Authors (1)

Andreas Handel

Author, Maintainer

Contributors (7)

Cody Dailey

Contributor · added in 0.9.3

Yang Ge

Contributor · added in 0.8.0

Spencer Hall

Contributor

Brian McKay

Contributor · added in 0.9.3

Sina Solaimanpour

Contributor

Alexis Vittengl

Contributor · added in 0.8.7

Henok Woldu

Contributor

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.0Latest
2026-07-09 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.9.6
2023-08-23 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.9.5
2022-07-01 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.9.3
2021-07-29 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.8.7
2021-03-20 · diff ↗
0.8.6
2020-07-14 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.8.2
2019-07-08 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.8.0
2019-04-04 · diff ↗

Show 4 earlier events

0.5.5
2019-02-11 · diff ↗
0.5.0
2019-01-17 · diff ↗
0.4.0
2018-08-13
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-08-13
Total releases: 11 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Bundled data: 1.0 KB / 2 files
Download size: 3.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DSAIRM")

Format

Handel, A., Dailey, C., Ge, Y., Hall, S., McKay, B., Solaimanpour, S., Vittengl, A., & Woldu, H. (2026). DSAIRM: Dynamical Systems Approach to Immune Response Modeling (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.DSAIRM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DSAIRM version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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