R Observatory: Metrics for YuGene version 1.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-04-15. Its history is shown below.

Reason: email to the maintainer was undeliverable

Details below reflect version 1.1.6, its last release before removal.

YuGene

1.1.6Package record

A Simple Approach to Scale Gene Expression Data Derived from Different Platforms for Integrated Analyses

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Florian RohartCRAN page ↗

Simple method for comparison of gene expression generated across different experiments, and on different platforms; that does not require global renormalization, and is not restricted to comparison of identical probes. YuGene works on a range of microarray dataset distributions, such as between manufacturers. The resulting output allows direct comparisons of gene expression between experiments and experimental platforms.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/YuGene/YuGene_1.1.6.tar.gz"
pkgFile <- "YuGene_1.1.6.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.1.6) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.6

READMENoVignettesNoNEWSYes · 33% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 6includes a package overview page
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 83%

How these are measured

Downloads

YuGene Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (2)

R >= 2.10mixOmics

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Kim-Anh Le Cao

Contributor

Florian Rohart

Contributor · added in 1.1

Leo McHugh

Contributor

Othmar Korn

Contributor · added in 1.1.1

Christine A. Wells

Contributor · added in 1.1.1

Maintainer since 1.1 (2014), previously Leo McHugh (1.0)

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-04-15
email to the maintainer was undeliverable
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.1.6
record
2018-05-17 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.1.5
record
2015-11-19 · diff ↗
1.1.4
record
2015-07-30 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.1.2
record
2014-07-07 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 2 exports
YuGene, pca
R
R 3.1.0 released · 2014-04-10
1.1.1
record
2014-02-12 · diff ↗
1.1
record
2014-02-12 · diff ↗
R
R 3.0.0 released · 2013-04-03

Show 2 earlier eventsHide 2 earlier events

1.0
record
2012-11-27
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-11-27
Total releases: 7 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 1.2 MB / 3 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("YuGene")

Format

Cao, K. L., Rohart, F., McHugh, L., Korn, O., & Wells, C. A. (n.d.). YuGene: A Simple Approach to Scale Gene Expression Data Derived from Different Platforms for Integrated Analyses (Version 1.1.6) [Computer software]. Retrieved October 25, 2026, from https://CRAN.R-project.org/package=YuGene

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for YuGene version 1.1.6 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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