R Observatory: Metrics for VIProDesign version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

VIProDesign

0.1.0

A Comprehensive Tool for Protein Design

0packages depend

1.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Tatsiana BylundFirst published 2025-05-021 releasesCRAN page ↗

Provides tools for designing virus protein panels through sequence clustering and protein sequence analysis. The package includes functionality for filtering sequences, removing redundancy, identifying outliers, clustering sequences, and calculating entropy to evaluate clustering quality. A publication describing these methods is in preparation and will be added once available.

Install

R (CRAN)Ubuntu (r2u)

install.packages("VIProDesign", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-viprodesign

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-08-02
11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.7K

CRAN downloads in the past year

Rank #21,326 · ~5/day · ~140/mo

Releases R versions

Daily download trend is not available in this view yet.

16830 days

51590 days

1.7K1 year

Compare downloads with other packages →

Also on100 r2u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (6)

Biostrings DECIPHERclusterpathviewr dbscan ape

LinkingTo (0)

none

Suggests (1)

optparse

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Tatsiana Bylund

Author, Maintainer

Authors (1)

Tatsiana Bylund

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-05-02
Total releases: 1 / 1 yrs
License: Apache License 2.0 OSI
Download size: 15 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("VIProDesign")

Format

Bylund, T. (2025). VIProDesign: A Comprehensive Tool for Protein Design (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.VIProDesign

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for VIProDesign version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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