UKBAnalytica

1.0.0

UK Biobank Data Processing and Survival Analysis Toolkit

0packages depend

335downloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Nan HeFirst published 2026-06-301 releasesCRAN page ↗GitHub ↗

Provides an integrated workflow for UK Biobank Research Analysis Platform (RAP) hosted and RAP-generated analysis tables. The package supports RAP phenotype extraction planning, predefined variable sets and disease definitions, standardized baseline preprocessing, multi-source endpoint ascertainment, prevalent and incident case classification, survival-ready cohort construction, regression, multiple imputation, propensity score analysis, mediation analysis, subgroup and sensitivity analyses, machine learning, proteomics enrichment and protein-protein interaction analysis, and publication-oriented visualization. The package workflow is described in He et al. (2026) doi:10.64898/2026.06.19.26356057.

Install

R (CRAN)pak (dev)Fedora (COPR)openSUSE (OBS)

install.packages("UKBAnalytica", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Hinna0818/UKBAnalytica")

Development version from Hinna0818/UKBAnalytica. Installs pak first if it is not already available.

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-UKBAnalytica

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-UKBAnalytica

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.4 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-01
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 99%
Return-value docs: 100%
References docs: 2%

Downloads

335

CRAN downloads in the past year

Rank #24,105 · ~1/day · ~28/mo

Releases R versions

Daily download trend is not available in this view yet.

33530 days

33590 days

3351 year

Compare downloads with other packages →

Also on16 autocran

Repository

GitHub ↗ hinna0818/ukbanalytica

35Stars

0Forks

0Open issues

0Open PRs

0Releases

115Commits

1Contributors

115 commits · Last activity 2026-07-18 · +6.1% stars, 30d

Stars over time

2026-04-19 · 132026-07-26 · 35

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/hinna0818/ukbanalytica on 2026-07-26.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

Makefile

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

31 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (16)

data.table stringi ggplot2 rlang scalessurvivalpROC tableone mice mitools sandwich lmtestMASSmgcvxml2 igraph

LinkingTo (0)

none

Suggests (20)

testthat rms gbm cobalt survminer MatchIt regmedint ranger xgboost glmnet e1071nnetrpartBoruta rBayesianOptimization randomForestSRC clusterProfiler AnnotationDbi org.Hs.eg.db qs2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Nan He

Author, Maintainer

Authors (1)

Nan He

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

1.0.0Latest
2026-06-30 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-30
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0
Bundled data: 136 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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