R Observatory: Metrics for SoilR version 1.2.107

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SoilR

1.2.107Package record

Models of Soil Organic Matter Decomposition

0packages depend

4.9Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Carlos A. SierraCRAN page ↗

Functions for modeling Soil Organic Matter decomposition in terrestrial ecosystems with linear and nonlinear systems of differential equations. The package implements models according to the compartmental system representation described in Sierra and others (2012) doi:10.5194/gmd-5-1045-2012 and Sierra and others (2014) doi:10.5194/gmd-7-1919-2014.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SoilR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-soilr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SoilR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SoilR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Carlos A. Sierra <csierra@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A."),
                      family = "Sierra",
                      role = c("aut", "cre"),
                      email = "csierra@bgc-jena.mpg.de"),
               person(given = "Markus",
                      family = "Mueller",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 5.0 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-09-08
ERROR10 OK, 2 NOTE, 1 ERROR2026-09-07
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.107

READMENoVignettesNoNEWSYes · 33% structuredCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 470 (2 internal)includes a package overview page
Examples that run: 100%49 run in a plain check
Exported functions with examples: 28%
Documented parameters: 97%
Return-value docs: 50%
Help pages citing references: 11%

How these are measured

Downloads

4.9K

CRAN downloads in the past year

Rank #6,677 · ~14/day · ~411/mo

Releases R versions

Daily download trend is not available in this view yet.

54030 days

1.3K90 days

4.9K1 year

Compare downloads with other packages →

Also on141 r2u4 autocran136 c2d4u

How downloads are counted

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing SoilR adds 14 packages (10 with compiled code, 11 MB of source tarballs). Heaviest: igraph 4.8 MB, deSolve 1.9 MB, vctrs 1.0 MB.

Depends (3)

R >= 3.5.0deSolvemethods

Imports (6)

igraph assertthatparallelexpm sets purrr

LinkingTo (0)

none

Suggests (7)

FMElatticeMASSknitr rmarkdown getopt tinytex

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Carlos A. Sierra

Markus Mueller

Maintainer since 1.2.105 (2022), previously Markus Mueller (1.0-0 to 1.1-23)

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.107Latest
record
2023-10-13 · current release · diff ↗
1.2.106
record
2023-10-12 · diff ↗ ·
removed 1 export
WangThreePoolNonAutonomous_sym
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
unarchivedReturned to CRAN
2022-01-23
1.2.105
record
2022-01-23 · diff ↗ ·
removed 2 exports
BoundInFlux, as.character

added 51 exports
example.2DInFluxes.Args, ConstantOutFluxRateList_by_PoolIndex, ConstantInternalFluxRateList_by_PoolIndex, UnBoundNonLinDecompOp, Delta14C, euler, plotPoolGraphFromTupleLists, getTransferMatrixFunc, GeneralNlModel, PoolIndex, BoundInFluxes, ConstInFluxes, FcAtm.from.Dataframe, SoilR.F0.new, InFluxes, by_PoolIndex, getSolution, getDecompOp, getCompartmentalMatrixFunc, GeneralDecompOp, UnBoundLinDecompOp, Model_by_PoolNames, AWBmodel, SeriesLinearModel, SeriesLinearModel14, TimeMap, CenturyModel, CenturyModel14, systemAge, state_variable_names and 21 more
archivedRemoved from CRAN
2021-12-09
check problems were not corrected in time On M1 Macs
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03

Show 9 earlier eventsHide 9 earlier events

R
R 3.2.0 released · 2015-04-16
1.1-23
record
2014-04-30 · diff ↗ ·
removed 5 exports
FcAtm.from.Dataframe, SoilR.F0.new, print, plot, summary

added 16 exports
ConstLinDecompOp, ConstFc, BoundInFlux, TwopMMmodel, ThreepairMMmodel, YassoModel, bacwaveModel, turnoverFit, getTransitTimeDistributionDensity, getMeanTransitTime, Yasso07Model, bind.C14curves, BoundLinDecompOp, BoundFc, Model, Model_14
R
R 3.1.0 released · 2014-04-10
1.0-7
record
2013-10-10 · diff ↗ ·
removed 1 export
pattern:.

added 68 exports
AbsoluteFractionModern_from_Delta14C, Delta14C_from_AbsoluteFractionModern, FcAtm.from.Dataframe, GaudinskiModel14, GeneralModel, GeneralModel_14, ICBMModel, OnepModel, OnepModel14, ParallelModel, RespirationCoefficients, RothCModel, SoilR.F0.new, ThreepFeedbackModel, ThreepFeedbackModel14, ThreepParallelModel, ThreepParallelModel14, ThreepSeriesModel, ThreepSeriesModel14, TimeMap.from.Dataframe, TimeMap.new, TwopFeedbackModel, TwopFeedbackModel14, TwopParallelModel, TwopParallelModel14, TwopSeriesModel, TwopSeriesModel14, fT.Arrhenius, fT.Century1, fT.Century2 and 38 more
R
R 3.0.0 released · 2013-04-03
1.0-3
record
2012-07-25 · diff ↗
1.0-2
record
2012-07-20 · diff ↗
1.0-0
record
2012-04-01
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-04-01
Total releases: 8 / 14 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 217 KB / 12 files
Download size: 1.6 MB

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' entry:

citation("SoilR")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.5194/gmd-5-1045-2012.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SoilR version 1.2.107 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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