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SemiPar.depCens

Copula Based Cox Proportional Hazards Models for Dependent Censoring

v0.1.3 · Aug 26, 2024 · GPL-3

Description

Copula based Cox proportional hazards models for survival data subject to dependent censoring. This approach does not assume that the parameter defining the copula is known. The dependency parameter is estimated with other finite model parameters by maximizing a Pseudo likelihood function. The cumulative hazard function is estimated via estimating equations derived based on martingale ideas. Available copula functions include Frank, Gumbel and Normal copulas. Only Weibull and lognormal models are allowed for the censoring model, even though any parametric model that satisfies certain identifiability conditions could be used. Implemented methods are described in the article "Copula based Cox proportional hazards models for dependent censoring" by Deresa and Van Keilegom (2024) <doi:10.1080/01621459.2022.2161387>.

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23

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96

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Trend: -100% (30d vs prior 30d)

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3

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11

Last 30 days

1

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autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

2,148

Files

35

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,370 (63.8%)Tests 89 (4.1%)Docs 689 (32.1%)

API

Exported functions

4

Internal functions

11

Recent export changes

v0.1.1+4 SolveL, SolveLI, fitDepCens +1 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.06

testthat edition

3

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

100%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5.0

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

3

First release

2024-02-29

Latest release

2024-08-26

Avg cadence

90 days

Cold removal rate

Dep drift

0

LOC over versions

v0.1.1: 2,121 LOCv0.1.2: 2,136 LOCv0.1.3: 2,148 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies survival copula foreach doParallel pbivnorm SemiPar.depCens

Version History

4 tracked
new 0.1.3 Mar 10, 2026
updated 0.1.3 ← 0.1.2 diff Aug 26, 2024
updated 0.1.2 ← 0.1.1 diff Mar 28, 2024
new 0.1.1 Feb 28, 2024