R Observatory: Metrics for SemiPar.depCens version 0.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SemiPar.depCens

0.1.3Package record

Copula Based Cox Proportional Hazards Models for Dependent Censoring

0packages depend

2.3Kdownloads / year

52.1%test coverage

13/13flavors OK

Overview

About

Maintained by Negera Wakgari DeresaCRAN page ↗GitHub ↗Issues ↗

Copula based Cox proportional hazards models for survival data subject to dependent censoring. This approach does not assume that the parameter defining the copula is known. The dependency parameter is estimated with other finite model parameters by maximizing a Pseudo likelihood function. The cumulative hazard function is estimated via estimating equations derived based on martingale ideas. Available copula functions include Frank, Gumbel and Normal copulas. Only Weibull and lognormal models are allowed for the censoring model, even though any parametric model that satisfies certain identifiability conditions could be used. Implemented methods are described in the article "Copula based Cox proportional hazards models for dependent censoring" by Deresa and Van Keilegom (2024) doi:10.1080/01621459.2022.2161387.

Changes in 0.1.3

Add the number of cores as argument and increase the default number of bootstrap samples

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SemiPar.depCens", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Nago2020/SemiPar.depCens")

Development version from Nago2020/SemiPar.depCens. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-semipar.depcens

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SemiPar.depCens

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SemiPar.depCens

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.3

READMEYes · 338 wordsVignettesNoNEWSYes · 100% structured · mentions 0.1.3Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16
Examples that run: 0%4 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 13%

How these are measured

Downloads

2.3K

CRAN downloads in the past year

Rank #22,441 · ~6/day · ~194/mo

Releases R versions

Daily download trend is not available in this view yet.

21930 days

59390 days

2.3K1 year

Compare downloads with other packages →

Also on70 r2u6 autocran

How downloads are counted

Repository

nago2020/semipar.depcens ↗Account: Nago2020

3Stars

0Forks

2Open issues

0Open PRs

1Releases

20Commits

1Commit identities

20 commits · Last activity 2024-08-26

Responsiveness

not measured

Stars over time

2024-12-18 · 32026-07-07 · 3

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/nago2020/semipar.depcens on 2026-10-21.

Docs source (1)

README.Rmd

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing SemiPar.depCens adds 13 packages (7 with compiled code, 7.5 MB of source tarballs). Heaviest: copula 3.5 MB, colorspace 2.0 MB, mvtnorm 1.0 MB.

Depends (1)

R >= 3.5.0

Imports (7)

survivalcopulastatsforeachparalleldoParallel pbivnorm

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Negera Wakgari Deresa

Author, Maintainer since 0.1.1 (2024)

Ingrid Van Keilegom

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.3Latest
record
2024-08-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.2
record
2024-03-29 · diff ↗
0.1.1
record
2024-02-29
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-02-29
Total releases: 3 / 2 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 6.4 KB / 1 file
Download size: 25 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SemiPar.depCens")

Format

Deresa, N. W., & Van Keilegom, I. (2024). SemiPar.depCens: Copula Based Cox Proportional Hazards Models for Dependent Censoring (Version 0.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.SemiPar.depCens

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SemiPar.depCens version 0.1.3 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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