SP2000

0.2.0

Catalogue of Life Toolkit

0packages depend

2.8Kdownloads / year

7.2%test coverage

13/13checks pass

Overview

About

Maintained by Liuyong DingFirst published 2020-03-208 releasesCRAN page ↗GitHub ↗

A programmatic interface to http://sp2000.org.cn, re-written based on an accompanying 'Species 2000' API. Access tables describing catalogue of the Chinese known species of animals, plants, fungi, micro-organisms, and more. This package also supports access to catalogue of life global http://catalogueoflife.org, China animal scientific database http://zoology.especies.cn and catalogue of life Taiwan https://taibnet.sinica.edu.tw/home_eng.php. The development of 'SP2000' package were supported by Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China <2019HJ2096001006>,Yunnan University's "Double First Class" Project <C176240405> and Yunnan University's Research Innovation Fund for Graduate Students <2019227>.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SP2000", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Otoliths/SP2000")

Development version from Otoliths/SP2000. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sp2000

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SP2000

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SP2000

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.02

7.2%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 6%
Documented parameters: 100%
Return-value docs: 87%
References docs: 25%

Downloads

2.8K

CRAN downloads in the past year

Rank #16,152 · ~8/day · ~230/mo

Releases R versions

Daily download trend is not available in this view yet.

17330 days

70690 days

2.8K1 year

Compare downloads with other packages →

Also on87 r2u21 autocran

Repository

GitHub ↗ otoliths/sp2000

14Stars

3Forks

0Open issues

0Open PRs

8Releases

457Commits

1Contributors

species2000chinabiodiversityanimalsplantsfungimicroorganismscatalogue-of-life-china

License MIT · 457 commits · Last activity 2023-11-29

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/otoliths/sp2000 on 2026-07-19.

Continuous integration (2)

GitHub ActionsTravis CI

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.0

Imports (9)

jsonlite tibble pbmcapply purrr rlist XML xml2 DT urltools

LinkingTo (0)

none

Suggests (2)

utilstestthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,151 (60%)Rd 776 (40%)

Code characteristics

Cyclomatic complexity: 2.0 median / 6 max
Test cases: 1 / 0.02 per code line

Test coverage

Line coverage

Expression

6.8%

Tests / Examples

7.2% / 2% ex

Functions

36 16 exported

Complexity

2.2 avg / 6 max

Call network

36 nodes / 25 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

36 functions

Function	Cyclo	Coverage
download_col_china exp	5	0%
get_col_global exp	2	0%
get_col_taiwan exp	3	0%
get_province exp	1	0%
get_redlist_china exp	4	0%
get_top20 exp	1	0%

People & History

People (7)

Maintainer (1)

Liuyong Ding

Author, Maintainer

Authors (1)

Liuyong Ding

Author, Maintainer

Contributors (6)

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2.0Latest
2020-10-26 · current release · diff ↗
0.1.0
2020-08-04 · diff ↗
0.0.10
2020-06-07 · diff ↗
0.0.9
2020-06-06 · diff ↗
0.0.8
2020-05-26 · diff ↗
0.0.7
2020-05-22 · diff ↗
0.0.6
2020-05-14 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.0.5
2020-03-20
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-03-20
Total releases: 8 / 6 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 3.0.0
Download size: 27 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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