R Observatory: Metrics for EthSEQ version 3.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EthSEQ

3.0.2Package record

Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data

0packages depend

4.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Alessandro RomanelCRAN page ↗

Reliable and rapid ethnicity annotation from whole exome and targeted sequencing data.

Install

R (CRAN)Ubuntu (r2u)

install.packages("EthSEQ", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ethseq

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.7 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE13 OK, 1 NOTE2026-04-22
ERROR12 OK, 1 NOTE, 1 ERROR2026-04-18

Show 3 earlier changesHide 3 earlier changes

NOTE13 OK, 1 NOTE2026-04-10
ERROR12 OK, 1 NOTE, 1 ERROR2026-04-09
NOTE13 OK, 1 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 3.0.2

READMENoVignettesYes · 1 · dynamicNEWSYes · 33% structuredCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 4
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 100%
Return-value docs: 75%
Help pages citing references: 0%

Vignettes (1)

EthSEQ: Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data HTML

How these are measured

Downloads

4.2K

CRAN downloads in the past year

Rank #9,240 · ~12/day · ~353/mo

Releases R versions

Daily download trend is not available in this view yet.

42430 days

1.1K90 days

4.2K1 year

Compare downloads with other packages →

Also on364 r2u

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing EthSEQ adds 10 packages (4 with compiled code, 11 MB of source tarballs). Heaviest: data.table 5.7 MB, Rcpp 1.8 MB, plot3D 1.8 MB. 2 more not on CRAN are not measured.

Depends (1)

R >= 2.15

Imports (11)

graphicsutilsparallelgrDevicesMASSgeometry data.table SNPRelate (>= 1.8.0)gdsfmt plot3D Rcpp

LinkingTo (1)

Rcpp

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Alessandro Romanel

Author, Maintainer since 2.0.0 (2017)

Davide Dalfovo

Author · added in 2.1.4

Releases (10)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
3.0.2Latest
record
2023-03-18 · current release · diff ↗
3.0.1
record
2023-01-10 · diff ↗
3.0.0
record
2022-09-14 · diff ↗ ·
added 3 exports
getModelsList, getSamplesInfo, pattern:^[[:alpha:]]+
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.1.4
record
2021-02-18 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.1.3
record
2019-11-22 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2.1.2
record
2018-03-16 · diff ↗
2.1.1
record
2017-09-16 · diff ↗

Show 5 earlier eventsHide 5 earlier events

2.1.0
record
2017-07-23 · diff ↗
R
R 3.4.0 released · 2017-04-21
2.0.1
record
2017-04-06 · diff ↗
2.0.0
record
2017-04-03
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-04-03
Total releases: 10 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.15
Download size: 1.8 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("EthSEQ")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EthSEQ version 3.0.2 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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