R Observatory: Metrics for SNPRelate version 0.9.19

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2014-05-31. Its history is shown below.

Reason: it depends on 'gdsfmt'

Details below reflect version 0.9.19, its last release before removal.

SNPRelate

0.9.19

Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)

6packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Xiuwen Zheng20 releasesCRAN page ↗

A High-performance computing toolset for relatedness and principal component analysis of SNP data

Install

BioconductorR (source archive)Ubuntu (r2u)

BiocManager::install("SNPRelate")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/SNPRelate/SNPRelate_0.9.19.tar.gz"
pkgFile <- "SNPRelate_0.9.19.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.9.19) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-snprelate

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.01

not tracked

Coverage

1

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 48%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on807 r2u6K bioconda

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (2)

R >= 2.10gdsfmt

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

latticeRUnit

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

6direct

–indirect (not tracked)

EthSEQ dartR dartR.base gwid simplePHENOTYPES snplinkage

Code & Tests

Datasets

People & History

People (1)

Other (1)

Xiuwen Zheng

Contributor

Package Timeline

20 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.2.0 released · 2015-04-16
archivedRemoved from CRAN
2014-05-31
it depends on 'gdsfmt'
R
R 3.1.0 released · 2014-04-10
0.9.19
2013-12-19 · diff ↗
0.9.18
2013-09-29 · diff ↗
0.9.17
2013-09-04 · diff ↗
0.9.16
2013-08-16 · diff ↗
0.9.15
2013-06-08 · diff ↗
0.9.14
2013-05-22 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.9.12
2013-02-27 · diff ↗
0.9.13
2013-02-25 · diff ↗
0.9.11
2013-01-30 · diff ↗
0.9.9
2013-01-27 · diff ↗
0.9.10
2013-01-21 · diff ↗
0.9.8
2012-09-30 · diff ↗

Show 11 earlier events

0.9.7
2012-08-30 · diff ↗
0.9.6
2012-07-14 · diff ↗
0.9.5
2012-04-02 · diff ↗
R
R 2.15.0 released · 2012-03-30
0.9.4
2012-03-16 · diff ↗
0.9.3
2012-02-24 · diff ↗
0.9.2
2012-02-01 · diff ↗
R
R 2.14.0 released · 2011-10-31
0.9.1
2011-08-11 · diff ↗
0.9.0
2011-08-02
R
R 2.13.0 released · 2011-04-13

Package metadata

Total releases: 20
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 76 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SNPRelate")

Format

Zheng, X. (n.d.). SNPRelate: Parallel Computing Toolset for Genome-Wide Association Studies (GWAS) (Version 0.9.19) [Computer software]. Retrieved August 25, 2026, from https://CRAN.R-project.org/package=SNPRelate

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SNPRelate version 0.9.19 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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