R Observatory: Metrics for SNPRelate version 0.9.19

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2014-05-31. Its history is shown below.

Reason: it depends on 'gdsfmt'

Details below reflect version 0.9.19, its last release before removal.

SNPRelate

0.9.19Package record

Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)

6packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Xiuwen ZhengCRAN page ↗Website ↗

A High-performance computing toolset for relatedness and principal component analysis of SNP data

Install

BioconductorR (source archive)

BiocManager::install("SNPRelate")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/SNPRelate/SNPRelate_0.9.19.tar.gz"
pkgFile <- "SNPRelate_0.9.19.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.9.19) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.9.19

READMENoVignettesYes · 1 · dynamicNEWSYes · 67% structuredCitation fileYes · cites a publicationWebsiteYes

Help pages: 44includes a package overview page
Examples that run: 100%36 run in a plain check
Exported functions with examples: 83%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 48%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on1.5K r2u7.3K bioconda

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (2)

R >= 2.10gdsfmt

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

latticeRUnit

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

6direct

–indirect (not tracked)

Imports 6

Depends, Imports or LinkingTo, most downloaded first

dartR dartR.base simplePHENOTYPES EthSEQ snplinkage gwid

How these are counted

Code & Tests

Datasets

People & History

People (1)

Xiuwen Zheng

Contributor

Maintainer since 0.9.0 (2011)

Releases (20)

Pick two releases to compare their code metrics.

R
R 3.2.0 released · 2015-04-16
archivedRemoved from CRAN
2014-05-31
it depends on 'gdsfmt'
R
R 3.1.0 released · 2014-04-10
0.9.19
record
2013-12-19 · diff ↗
0.9.18
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2013-09-29 · diff ↗
0.9.17
record
2013-09-04 · diff ↗
0.9.16
record
2013-08-16 · diff ↗
0.9.15
record
2013-06-08 · diff ↗
0.9.14
record
2013-05-22 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.9.13
record
2013-02-25 · diff ↗
0.9.12
record
2013-02-27 · diff ↗
0.9.11
record
2013-01-30 · diff ↗
0.9.10
record
2013-01-21 · diff ↗
0.9.9
record
2013-01-27 · diff ↗
0.9.8
record
2012-09-30 · diff ↗

Show 11 earlier eventsHide 11 earlier events

0.9.7
record
2012-08-30 · diff ↗
0.9.6
record
2012-07-14 · diff ↗
0.9.5
record
2012-04-02 · diff ↗
R
R 2.15.0 released · 2012-03-30
0.9.4
record
2012-03-16 · diff ↗
0.9.3
record
2012-02-24 · diff ↗
0.9.2
record
2012-02-01 · diff ↗ ·
added 1 export
pattern:.
R
R 2.14.0 released · 2011-10-31
0.9.1
record
2011-08-11 · diff ↗
0.9.0
record
2011-08-02
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-08-02
Total releases: 20 / 15 yrs
License: GPL-3 OSI · relicensed from LGPL-3 in 0.9.10
Minimum R: ≥ 2.10
Bundled data: 76 KB / 1 file

Cite

Cite this package

Run in R for the authors' entry:

citation("SNPRelate")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/bts606.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SNPRelate version 0.9.19 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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