R Observatory: Metrics for SIMPLICA version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SIMPLICA

1.0.0Package record

Biclustering via Simplivariate Component Analysis

0packages depend

1.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Jos HagemanCRAN page ↗GitHub ↗Issues ↗

Identifies constant, additive, multiplicative, and user-defined simplivariate components in numeric data matrices using a genetic algorithm. Supports flexible pattern definitions and provides visualization for general biclustering applications across diverse domains. The method builds on simplivariate models as introduced in Hageman et al. (2008) doi:10.1371/journal.pone.0003259 and is related to biclustering frameworks as reviewed by Madeira and Oliveira (2004) doi:10.1109/TCBB.2004.2.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SIMPLICA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("joshageman/SIMPLICA")

Development version from joshageman/SIMPLICA. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-simplica

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SIMPLICA

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SIMPLICA

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 57 s · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

README· In the repository, left out of the releaseVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 20
Examples that run: 86%6 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 35%
Documented parameters: 99%
Return-value docs: 100%
Help pages citing references: 5%

How these are measured

Downloads

1.8K

CRAN downloads in the past year

Rank #24,426 · ~5/day · ~149/mo

Releases R versions

Daily download trend is not available in this view yet.

17930 days

50390 days

1.8K1 year

Compare downloads with other packages →

Also on55 r2u3 autocran

How downloads are counted

Repository

joshageman/simplica ↗Account: JosHageman

3Stars

0Forks

0Open issues

0Open PRs

0Releases

19Commits

1Commit identities

19 commits · Last activity 2025-08-29 · 0% stars, 30d

Responsiveness

not measured

Stars over time

2025-09-17 · 32026-07-07 · 3

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/joshageman/simplica on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing SIMPLICA adds 24 packages (10 with compiled code, 24 MB of source tarballs). Heaviest: ggplot2 6.0 MB, GA 4.8 MB, ggsci 2.1 MB.

Depends (1)

R >= 2.10

Imports (3)

GA ggplot2 ggsci

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Jos Hageman

Author, Maintainer since 1.0.0 (2025)

Releases (1)

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
record
2025-09-03 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-09-03
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 52 KB / 1 file
Download size: 81 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SIMPLICA")

Format

Hageman, J. (2025). SIMPLICA: Biclustering via Simplivariate Component Analysis (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.SIMPLICA

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SIMPLICA version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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