R Observatory: Metrics for RuHere version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RuHere

1.0.1

Flags Spatial Errors in Biological Collection Data Using Specialists' Information

0packages depend

1.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Weverton C. F. TrindadeFirst published 2026-02-171 releasesCRAN page ↗GitHub ↗

Automatically flags common spatial errors in biological collection data using metadata and specialists' information. RuHere implements a workflow to manage occurrence data through six steps: dataset merging, metadata flagging, validation against expert-derived distribution maps, visualization of flagged records, and sampling bias exploration. It specifically integrates specialist-curated range information to identify geographic errors and introductions that often escape standard automated validation procedures. For details on the methodology, see: Trindade & Caron (2026) doi:10.64898/2026.02.02.703373.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("RuHere", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("wevertonbio/RuHere")

Development version from wevertonbio/RuHere. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ruhere

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RuHere

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 21.6 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

16

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-09
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 313 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 79%
Documented parameters: 100%
Return-value docs: 100%
References docs: 6%

Downloads

1.6K

CRAN downloads in the past year

Rank #14,679 · ~4/day · ~135/mo

Releases R versions

Daily download trend is not available in this view yet.

22730 days

70690 days

1.6K1 year

Compare downloads with other packages →

Also on224 r2u

Repository

GitHub ↗ wevertonbio/ruhere

3Stars

1Forks

0Open issues

0Open PRs

1Releases

237Commits

2Contributors

237 commits · Last activity 2026-08-21 · 0% stars, 30d

Stars over time

2026-02-23 · 12026-07-07 · 3

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/wevertonbio/ruhere on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

23 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (16)

Rcpp terra data.table faunabr florabr (>= 1.3.1)jsonlite rgbif rredlist stringi BIEN ridigbio fields ggplot2 mapview sf ggnewscale

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (5)

pbapply knitr R.utils rmarkdown CoordinateCleaner

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Weverton C. F. Trindade

Author, Maintainer

Authors (2)

Weverton C. F. Trindade

Author, Maintainer

Fernanda S. Caron

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.1Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-02-17
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5
Bundled data: 1.6 MB / 17 files
Download size: 2.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RuHere")

Format

Trindade, W. C. F., & Caron, F. S. (2026). RuHere: Flags Spatial Errors in Biological Collection Data Using Specialists' Information (Version 1.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.RuHere

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RuHere version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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