R Observatory: Metrics for Rsampletrees version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2020-08-27. Its history is shown below.

Reason: requires archived package 'haplo.stats'

Details below reflect version 1.0.3, its last release before removal.

Rsampletrees

1.0.3Package record

MCMC Sampling of Gene Genealogies Conditional on Genetic Data

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Kelly BurkettCRAN page ↗

Sample ancestral trees conditional on phased or unphased SNP genotype data. The actual tree sampling is done using a C++ program that is launched within R. The package also contains functions for specifying the tree-sampling settings (pre-processing) and for storing and manipulating the sampled trees (post-processing). More information about 'sampletrees' can be found at http://stat.sfu.ca/statgen/research/sampletrees.html.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/Rsampletrees/Rsampletrees_1.0.3.tar.gz"
pkgFile <- "Rsampletrees_1.0.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.3

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 17 (1 internal)includes a package overview page
Examples that run: 31%5 run in a plain check · 11 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 90%
Help pages citing references: 94%

How these are measured

Downloads

Rsampletrees Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (3)

Rcpp haplo.stats ape

LinkingTo (1)

Rcpp

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Kelly Burkett

Contributor

Brad McNeney

Contributor

Jinko Graham

Contributor

Jean-Francois Lefebvre

Contributor · added in 1.0

Maintainer since 1.0.2 (2018), previously Jean-Francois Lefebvre (1.0 to 1.0.1) and Kelly Burkett (0.1)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2020-08-27
requires archived package 'haplo.stats'
R
R 4.0.0 released · 2020-04-24
1.0.3
record
2020-03-02 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.0.2
record
2018-01-03 · diff ↗
1.0.1
record
2017-08-29 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.0
record
2017-04-18 · diff ↗ ·
added 1 export
pattern:^[[:alpha:]]+
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.1
record
2014-08-01
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-08-01
Total releases: 5 / 12 yrs
License: GPL (>= 2) OSI

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("Rsampletrees")

Format

Burkett, K., McNeney, B., Graham, J., & Lefebvre, J. (n.d.). Rsampletrees: MCMC Sampling of Gene Genealogies Conditional on Genetic Data (Version 1.0.3) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=Rsampletrees

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for Rsampletrees version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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