R Observatory: Metrics for RawHummus version 0.3.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RawHummus

0.3.3Package record

Raw Data Quality Control Tool for LC-MS System

0packages depend

3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Yonghui DongCRAN page ↗

Assess LC–MS system performance by visualizing instrument log files and monitoring raw quality control samples within a project.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RawHummus", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rawhummus

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RawHummus

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RawHummus

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.3

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 100%1 run in a plain check (under a condition)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 0%
Help pages citing references: 0%

Vignettes (1)

RawHummus HTML

How these are measured

Downloads

3K

CRAN downloads in the past year

Rank #16,315 · ~8/day · ~250/mo

Releases R versions

Daily download trend is not available in this view yet.

29630 days

76690 days

3K1 year

Compare downloads with other packages →

Also on69 r2u3 autocran

How downloads are counted

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing RawHummus adds 87 packages (42 with compiled code, 79 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (0)

none

Imports (19)

config data.table dplyr ggplot2 golem (>= 0.3.5.9001)kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyMatrixstatsutils

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Yonghui Dong

Maintainer since 0.1.0 (2021), Author

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.3.3Latest
record
2023-04-20 · current release · diff ↗
0.3.0
record
2023-03-23 · diff ↗ ·
removed 1 export
runGui

added 1 export
run_app
0.2.3
record
2022-11-29 · diff ↗
0.2.2
record
2022-09-29 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2.1
record
2021-12-02 · diff ↗
0.2.0
record
2021-10-11 · diff ↗
0.1.8
record
2021-09-22 · diff ↗
0.1.5
record
2021-07-30 · diff ↗
0.1.0
record
2021-07-19
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-07-19
Total releases: 9 / 5 yrs
License: MIT + file LICENSE OSI · relicensed from GPL-3 in 0.3.0
Download size: 2.3 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RawHummus")

Format

Dong, Y. (2023). RawHummus: Raw Data Quality Control Tool for LC-MS System (Version 0.3.3) [Computer software]. https://doi.org/10.32614/CRAN.package.RawHummus

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RawHummus version 0.3.3 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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