R Observatory: Metrics for RRPP version 2.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RRPP

2.2.0Package record

Linear Model Evaluation with Randomized Residuals in a Permutation Procedure

1packages depend

21.8Kdownloads / year

37.5%test coverage

13/13flavors OK

Overview

About

Maintained by Michael CollyerCRAN page ↗GitHub ↗

Linear model calculations are made for many random versions of data. Using residual randomization in a permutation procedure, sums of squares are calculated over many permutations to generate empirical probability distributions for evaluating model effects. Additionally, coefficients, statistics, fitted values, and residuals generated over many permutations can be used for various procedures including pairwise tests, prediction, classification, and model comparison. This package should provide most tools one could need for the analysis of high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RRPP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mlcollyer/RRPP")

Development version from mlcollyer/RRPP. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rrpp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RRPP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RRPP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.2.0

READMEYes · 103 wordsVignettesYes · 2 · dynamicNEWSYes · 100% structured · does not mention 2.2.0Citation fileYes · cites a publication

Help pages: 113 (1 internal)includes a package overview page
Examples that run: 30%11 run in a plain check · 21 never run · 5 hold no code
Exported functions with examples: 43%
Documented parameters: 100%
Return-value docs: 31%
Help pages citing references: 29%

Vignettes (2)

ANOVA versus MANOVA in RRPP HTML
Using RRPP HTML

How these are measured

Downloads

21.8K

CRAN downloads in the past year

Rank #2,477 · ~60/day · ~1.8K/mo

Releases R versions

Daily download trend is not available in this view yet.

2.9K30 days

6.5K90 days

21.8K1 year

Compare downloads with other packages →

Also on370 r2u1 autocran194 c2d4u

How downloads are counted

Repository

mlcollyer/rrpp ↗Account: mlcollyer

4Stars

1Forks

2Open issues

0Open PRs

23Releases

534Commits

1Commit identities

534 commits · Last activity 2026-10-16 · The default branch showed an older version (2.1.2.999) than CRAN on 2026-10-18

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 2
Median days to close, 50 most recently updated closed PRs: 634

Releases over time

2026-07-14 · 222026-07-22 · 23

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/mlcollyer/rrpp on 2026-10-18.

Docs source (1)

GitHub Pages site last deployed 2026-10-16

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing RRPP adds 27 packages (15 with compiled code, 27 MB of source tarballs). Heaviest: ggplot2 6.0 MB, lme4 4.1 MB, nloptr 2.1 MB.

Depends (1)

R >= 4.4.0

Imports (5)

parallelape ggplot2Matrixlme4

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown testthat dplyr tibble

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

3indirect

Depends 1

Depends, Imports or LinkingTo, most downloaded first

geomorph

How these are counted

Code & Tests

Datasets

People & History

People (2)

Michael Collyer

Author, Maintainer since 0.1.0 (2018)

Dean Adams

Author

Releases (32)

Pick two releases to compare their code metrics.

2.2.0Latest
record
2026-07-03 · current release · diff ↗ ·
added 8 exports
fixef.lmm.rrpp, lmm.rrpp, looCV_table, powerTrans, print.betaTest, print.summary.betaTest, ranef.lmm.rrpp, summary.betaTest
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.1.2
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2025-02-19 · diff ↗
2.1.1
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2025-02-09 · diff ↗
2.1.0
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2025-02-01 · diff ↗ ·
added 11 exports
betaTest, kcomp, pairwise.model.Z, plot.kcomp, plot.ordinate, print.ICCstats, print.model.comparison, print.pairwise.model.Z, summary.ICCstats, summary.model.comparison, summary.pairwise.model.Z
2.0.4
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2024-11-14 · diff ↗ ·
added 1 export
mahal_dist
2.0.3
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2024-06-22 · diff ↗ ·
added 1 export
QRforX
2.0.2
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2024-06-12 · diff ↗
2.0.1
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2024-06-04 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.0.0
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2024-02-06 · diff ↗ ·
added 5 exports
ICCstats, anova.measurement.error, effect.size, lr_test, pval
1.4.0
record
2023-08-15 · diff ↗ ·
added 10 exports
focusMEonSubjects, getANOVAStats, getModelCov, getModels, getPermInfo, getResCov, getTerms, interSubVar, lm.rrpp.ws, measurement.error
R
R 4.3.0 released · 2023-04-21
1.3.1
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2022-09-12 · diff ↗
1.3.0
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2022-06-21 · diff ↗ ·
added 1 export
scaleCov

Show 26 earlier eventsHide 26 earlier events

R
R 4.2.0 released · 2022-04-22
1.2.3
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2022-03-19 · diff ↗
1.2.2
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2022-03-10 · diff ↗
1.2.1
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2022-03-01 · diff ↗
1.1.2
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2021-11-04 · diff ↗
1.1.1
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2021-10-24 · diff ↗
1.1.0
record
2021-10-09 · diff ↗ ·
added 1 export
looCV
R
R 4.1.0 released · 2021-05-18
1.0.0
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2021-03-30 · diff ↗ ·
added 1 export
convert2ggplot
0.6.2
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2021-01-11 · diff ↗
0.6.1
record
2020-06-24 · diff ↗
0.6.0
record
2020-05-28 · diff ↗ ·
added 2 exports
add.tree, ordinate
R
R 4.0.0 released · 2020-04-24
0.5.2
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2020-01-26 · diff ↗
0.5.1
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2020-01-19 · diff ↗
0.5.0
record
2019-12-19 · diff ↗ ·
added 1 export
prep.lda
0.4.3
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2019-10-07 · diff ↗
0.4.2
record
2019-05-19 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.4.1
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2019-04-02 · diff ↗
0.4.0
record
2019-03-24 · diff ↗ ·
added 22 exports
add.trajectories, manova.update, plot.lm.rrpp, plot.predict.lm.rrpp, print.anova.lm.rrpp, print.coef.lm.rrpp, print.lm.rrpp, print.pairwise, print.predict.lm.rrpp, print.summary.lm.rrpp, print.summary.pairwise, print.summary.trajectory.analysis, print.trajectory.analysis, reveal.model.designs, summary.anova.lm.rrpp, summary.coef.lm.rrpp, summary.lm.rrpp, summary.pairwise, summary.predict.lm.rrpp, summary.trajectory.analysis, trajectory.analysis, vec.cor.matrix
0.3.0
record
2018-07-23 · diff ↗ ·
added 3 exports
anova.lm.rrpp, classify, model.comparison
R
R 3.5.0 released · 2018-04-23
0.2.0
record
2018-04-22 · diff ↗ ·
added 1 export
pairwise
0.1.0
record
2018-01-22
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-01-22
Total releases: 32 / 8 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.4.0
Bundled data: 544 KB / 14 files
Download size: 1.0 MB

Appears in task views

Phylogenetics

Cite

Cite this package

Run in R for the authors' entry:

citation("RRPP")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1111/2041-210x.13029.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RRPP version 2.2.0 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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