R Observatory: Metrics for RNeXML version 2.4.11

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RNeXML

2.4.11

Semantically Rich I/O for the 'NeXML' Format

2packages depend

95.1Kdownloads / year

87.8%test coverage

0/13checks pass

Overview

About

Maintained by Carl BoettigerFirst published 2014-07-1828 releasesCRAN page ↗GitHub ↗

Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RNeXML", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ropensci/RNeXML")

Development version from ropensci/RNeXML. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rnexml

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RNeXML

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RNeXML

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 4.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.47

87.8%

Coverage · measured lines

100%

Documentation · exports

13

Dependencies · direct

Check history

NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 338 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 67%
Documented parameters: 98%
Return-value docs: 78%
References docs: 0%

Downloads

95.1K

CRAN downloads in the past year

Rank #1,490 · ~260/day · ~7.9K/mo

Releases R versions

Daily download trend is not available in this view yet.

5K30 days

18.7K90 days

95.1K1 year

Compare downloads with other packages →

Also on385 r2u16 autocran4.2K conda_forge501 bioconda109 c2d4u

Repository

GitHub ↗ ropensci/rnexml

15Stars

8Forks

12Open issues

0Open PRs

8Releases

1,018Commits

16Contributors

rrstatsnexmlphylogeneticsr-package

1,018 commits · Last activity 2024-05-06 · 0% stars, 30d

Stars over time

2024-03-24 · 132026-07-07 · 15

Repository practices

Upstream repositoryBeta

9 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ropensci/rnexml on 2026-08-09.

Continuous integration (4)

GitHub ActionsTravis CIAppVeyorCircleCI

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Research and citation (1)

codemeta.json

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

25 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.0.0apemethods

Imports (11)

XML plyr reshape2 httr (>= 0.3)uuid dplyr tidyr stringr stringi xml2 rlang

LinkingTo (0)

none

Suggests (13)

spelling rdflib geiger phytools knitr rfigshare knitcitations testthat rmarkdown xslt covr taxalight progress

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

17indirect

phylobase rotl

Code & Tests

People & History

People (5)

Maintainer (1)

Carl Boettiger

Maintainer, Author

Authors (5)

Maintainer, Author

Author

Author

Author

Author

Package Timeline

28 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.4.11Latest
2023-02-01 · current release · diff ↗
2.4.10
2023-01-09 · diff ↗
2.4.9
2022-12-16 · diff ↗
2.4.8
2022-10-20 · diff ↗
2.4.7
2022-05-13 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.4.6
2022-02-09 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.4.5
2020-06-18 · diff ↗
2.4.4
2020-05-10 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.4.3
2020-03-01 · diff ↗

Show 25 earlier events

2.4.2
2020-01-29 · diff ↗
2.4.0
2019-11-08 · diff ↗
R
R 3.6.0 released · 2019-04-26
2.3.0
2019-01-24 · diff ↗
2.2.0
2018-11-01 · diff ↗
2.1.2
2018-08-13 · diff ↗
2.1.1
2018-05-07 · diff ↗
2.1.0
2018-05-05 · diff ↗
R
R 3.5.0 released · 2018-04-23
2.0.8
2017-11-17 · diff ↗
R
R 3.4.0 released · 2017-04-21
2.0.7
2016-06-28 · diff ↗
R
R 3.3.0 released · 2016-05-03
2.0.6
2016-03-07 · diff ↗
2.0.5
2015-12-31 · diff ↗
2.0.4
2015-10-14 · diff ↗
2.0.3
2015-05-27 · diff ↗
2.0.2
2015-05-01 · diff ↗
R
R 3.2.0 released · 2015-04-16
2.0.1
2014-12-26 · diff ↗
2.0.0
2014-12-06 · diff ↗
1.1.3
2014-08-06 · diff ↗
1.1.2
2014-07-19 · diff ↗
1.1-0
2014-07-18
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-07-18
Total releases: 28 / 12 yrs
License: BSD_3_clause + file LICENSE OSI
Minimum R: ≥ 3.0.0
Download size: 482 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Phylogenetics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RNeXML")

Format

Boettiger, C., Chamberlain, S., Lapp, H., Shumelchyk, K., & Vos, R. (2023). RNeXML: Semantically Rich I/O for the 'NeXML' Format (Version 2.4.11) [Computer software]. https://doi.org/10.32614/CRAN.package.RNeXML

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RNeXML version 2.4.11 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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