R Observatory: Metrics for RIdeogram version 0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RIdeogram

0.2.2Package record

Drawing SVG Graphics to Visualize and Map Genome-Wide Data on Idiograms

0packages dependsuggested by 1

7.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Zhaodong HaoCRAN page ↗

For whole-genome analysis, idiograms are virtually the most intuitive and effective way to map and visualize the genome-wide information. RIdeogram was developed to visualize and map whole-genome data on idiograms with no restriction of species.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RIdeogram", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rideogram

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RIdeogram

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RIdeogram

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.2

READMEYes · 143 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16
Examples that run: 100%1 run in a plain check
Exported functions with examples: 33%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

RIdeogram Usage HTML

How these are measured

Downloads

7.7K

CRAN downloads in the past year

Rank #4,649 · ~21/day · ~639/mo

Releases R versions

Daily download trend is not available in this view yet.

65930 days

1.8K90 days

7.7K1 year

Compare downloads with other packages →

Also on120 r2u10 autocran3.2K conda_forge62 c2d4u

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing RIdeogram adds 35 packages (20 with compiled code, 30 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, isoband 1.5 MB.

Depends (1)

R >= 3.5.0

Imports (8)

ggplot2grDevicesgrImport2 rsvg scalestoolstidyrutils

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

lisat

How these are counted

Code & Tests

Datasets

People & History

People (7)

Zhaodong Hao

Author, Maintainer since 0.1.0 (2019)

Jinhui Chen

Author

Weijers Dolf

Author · added in 0.2.0

Author

Author

Author

Author

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.2.2Latest
record
2020-01-20 · current release · diff ↗
0.2.1
record
2019-12-02 · diff ↗
0.2.0
record
2019-11-08 · diff ↗ ·
added 1 export
GFFex
R
R 3.6.0 released · 2019-04-26
0.1.1
record
2019-01-15 · diff ↗
0.1.0
record
2019-01-08
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-01-08
Total releases: 5 / 7 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 3.5.0
Bundled data: 115 KB / 13 files
Download size: 4.8 MB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RIdeogram")

Format

Hao, Z., Chen, J., Dolf, W., Ge, Y., Lv, D., Shi, J., & Yu, G. (2020). RIdeogram: Drawing SVG Graphics to Visualize and Map Genome-Wide Data on Idiograms (Version 0.2.2) [Computer software]. https://doi.org/10.32614/CRAN.package.RIdeogram

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RIdeogram version 0.2.2 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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