R Observatory: Metrics for RHclust version 3.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RHclust

3.0.0Package record

Vector in Partition

0packages depend

3.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Joseph HandwerkerCRAN page ↗

Non-parametric clustering of joint pattern multi-genetic/epigenetic factors. This package contains functions designed to cluster subjects based on gene features including single nucleotide polymorphisms (SNPs), DNA methylation (CPG), gene expression (GE), and covariate data. The novel concept follows the general K-means (Hartigan and Wong (1979) doi:10.2307/2346830 framework but uses weighted Euclidean distances across the gene features to cluster subjects. This approach is unique in that it attempts to capture all pairwise interactions in an effort to cluster based on their complex biological interactions.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RHclust", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rhclust

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RHclust

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RHclust

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.3 min · r-release-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25

Show 2 earlier changesHide 2 earlier changes

NOTE13 OK, 1 NOTE2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 3.0.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 11
Examples that run: 9%1 run in a plain check · 10 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 45%

How these are measured

Downloads

3.7K

CRAN downloads in the past year

Rank #10,858 · ~10/day · ~308/mo

Releases R versions

Daily download trend is not available in this view yet.

32730 days

96690 days

3.7K1 year

Compare downloads with other packages →

Also on91 r2u4 autocran43 c2d4u

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing RHclust adds 24 packages (17 with compiled code, 22 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, RcppArmadillo 1.0 MB.

Depends (0)

none

Imports (10)

RunurangraphicsstatsutilsRfast dplyr stringrmethodsutilsclue

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (5)

Joseph Handwerker

Author, Contributor, Maintainer since 1.0.0 (2021)

Allison Plaxco

Author, Contributor · added in 3.0.0

Meredith Ray

Author, Contributor

Luke Pirrotta

Contributor · added in 3.0.0

Lauren Sobral

Contributor

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
3.0.0Latest
record
2026-04-18 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.0.0
record
2023-08-15 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.0
record
2022-06-17 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.0
record
2021-05-06
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-05-06
Total releases: 4 / 5 yrs
License: Artistic-2.0 OSI
Download size: 37 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RHclust")

Format

Handwerker, J., Pirrotta, L., Plaxco, A., Ray, M., & Sobral, L. (2026). RHclust: Vector in Partition (Version 3.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.RHclust

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RHclust version 3.0.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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