R Observatory: Metrics for RGBM version 1.0-11

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RGBM

1.0-11

LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction

0packages depend

8.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Raghvendra MallFirst published 2017-02-218 releasesCRAN page ↗

Provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RGBM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rgbm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RGBM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RGBM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 8%

Downloads

8.2K

CRAN downloads in the past year

Rank #5,256 · ~23/day · ~685/mo

Releases R versions

Daily download trend is not available in this view yet.

20030 days

1.5K90 days

8.2K1 year

Compare downloads with other packages →

Also on383 r2u14 autocran17 c2d4u

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (3)

foreach plyr doParallel

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Raghvendra Mall

Author, Maintainer

Authors (2)

Raghvendra Mall

Author, Maintainer

Khalid Kunji

Author

Contributors (1)

Melissa O'Neill

Contributor

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.0-11Latest
2023-04-14 · current release · diff ↗
unarchivedReturned to CRAN
2023-04-14
archivedRemoved from CRAN
2023-04-05
issues were not corrected in time
1.0-10
2022-09-26 · diff ↗
1.0-9
2022-08-11 · diff ↗
unarchivedReturned to CRAN
2022-08-11
archivedRemoved from CRAN
2022-04-27
check issues were not corrected in time length > 1 in && or ||
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23

Show 7 earlier events

1.0-8
2018-01-09 · diff ↗
1.0-7
2017-05-08 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.0-6
2017-04-01 · diff ↗
1.0-5
2017-04-01 · diff ↗
1.0-4
2017-02-21
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-02-21
Total releases: 8 / 9 yrs
License: GPL (>= 3) OSI
Download size: 25 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RGBM")

Format

Mall, R., Kunji, K., & O'Neill, M. (2023). RGBM: LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction (Version 1.0-11) [Computer software]. https://doi.org/10.32614/CRAN.package.RGBM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RGBM version 1.0-11 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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