R Observatory: Metrics for Plasmidprofiler version 0.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-03-25. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 0.1.6, its last release before removal.

Plasmidprofiler

0.1.6Package record

Visualization of Plasmid Profile Results

0packages depend

816downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Adrian ZetnerCRAN page ↗

Contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/Plasmidprofiler/Plasmidprofiler_0.1.6.tar.gz"
pkgFile <- "Plasmidprofiler_0.1.6.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.6) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Status changes

NOTE8 OK, 6 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.6

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 22
Examples that run: 19%4 run in a plain check · 17 never run
Exported functions with examples: 95%
Documented parameters: 100%
Return-value docs: 95%
Help pages citing references: 14%

How these are measured

Downloads

816

CRAN downloads in the past year

Rank #25,761 · ~2/day · ~68/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

8161 year

Compare downloads with other packages →

Also on54 r2u3 autocran1.2K conda_forge690 bioconda

How downloads are counted

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.2

Imports (15)

ape dplyr gdata ggdendro ggplot2gridgridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr

LinkingTo (0)

none

Suggests (1)

lintr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Adrian Zetner

Author, Maintainer since 0.1.5 (2017)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-03-25
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.1.6
record
2017-01-06 · diff ↗
0.1.5
record
2017-01-05
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-01-05
Total releases: 2 / 9 yrs
License: Apache License 2.0 OSI
Minimum R: ≥ 3.1.2
Bundled data: 13 KB / 3 files
Download size: 32 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("Plasmidprofiler")

Format

Zetner, A. (n.d.). Plasmidprofiler: Visualization of Plasmid Profile Results (Version 0.1.6) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=Plasmidprofiler

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for Plasmidprofiler version 0.1.6 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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