R Observatory: Metrics for PCPS version 1.0.9

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PCPS

1.0.9

Principal Coordinates of Phylogenetic Structure

0packages depend

6.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Vanderlei Julio DebastianiFirst published 2014-04-3010 releasesCRAN page ↗

Set of functions for analysis of Principal Coordinates of Phylogenetic Structure (PCPS).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PCPS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pcps

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PCPS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PCPS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-09
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 57%
Documented parameters: 92%
Return-value docs: 83%
References docs: 42%

Downloads

6.3K

CRAN downloads in the past year

Rank #6,657 · ~17/day · ~528/mo

Releases R versions

Daily download trend is not available in this view yet.

21930 days

1.3K90 days

6.3K1 year

Compare downloads with other packages →

Also on115 r2u17 autocran60 c2d4u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

SYNCSA

Imports (9)

ape picante phylobase vegan RcppArmadillostatsgraphicsparallelnlme

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Vanderlei Julio Debastiani

Author, Maintainer

Authors (1)

Vanderlei Julio Debastiani

Author, Maintainer

Listed in earlier versions (1)

Debastiani

no longer listed · 1.0.8 to 1.0.9

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.9Latest
2026-06-17 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.8
2025-08-24 · diff ↗
unarchivedReturned to CRAN
2025-08-24
archivedRemoved from CRAN
2025-06-12
requires archived package 'SYNCSA'
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.7
2020-01-15 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.6
2018-05-24 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.0.5
2018-04-10 · diff ↗

Show 9 earlier events

1.0.4
2018-03-23 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.3
2016-04-05 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.0.2
2015-01-13 · diff ↗
1.0.1
2014-05-13 · diff ↗
1.0
2014-04-30
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-04-30
Total releases: 10 / 12 yrs
License: GPL-2 OSI
Download size: 30 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("PCPS")

Format

Debastiani, V. J. (2026). PCPS: Principal Coordinates of Phylogenetic Structure (Version 1.0.9) [Computer software]. https://doi.org/10.32614/CRAN.package.PCPS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PCPS version 1.0.9 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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