R Observatory: Metrics for P2C2M version 0.7.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-11-10. Its history is shown below.

Reason: obsolete Python requirement was not corrected as requested

Details below reflect version 0.7.6, its last release before removal.

P2C2M

0.7.6

Posterior Predictive Checks of Coalescent Models

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Michael Gruenstaeudl3 releasesCRAN page ↗

Conducts posterior predictive checks of coalescent models using gene and species trees generated by 'BEAST' or '*BEAST'. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites: 'genealogicalSorting' and 'phybase'. To use these optional packages, the installation of the Python libraries 'NumPy' (>= 1.9.0) and 'DendroPy' (= 3.12.0) is required.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/P2C2M/P2C2M_0.7.6.tar.gz"
pkgFile <- "P2C2M_0.7.6.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.7.6) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

25%

Documentation · exports

4

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 92%
Return-value docs: 100%
References docs: 40%

Downloads

P2C2M Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.0

Imports (4)

ape ggplot2 rPython stringr

LinkingTo (0)

none

Suggests (4)

genealogicalSorting phybase Rmpi (>= 0.6-5)xtermStyle

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Other (2)

Michael Gruenstaeudl

Contributor

Noah Reid

Contributor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-11-10
obsolete Python requirement was not corrected as requested
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.7.6
2015-06-08 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.6
2015-01-28 · diff ↗
0.5
2014-10-23
R
R 3.1.0 released · 2014-04-10

Package metadata

Total releases: 3
License: GPL (>= 2) OSI
Additional repositories: userpage.fu-berlin.de
Minimum R: ≥ 3.0.0
Bundled data: 119 KB / 3 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("P2C2M")

Format

Gruenstaeudl, M., & Reid, N. (n.d.). P2C2M: Posterior Predictive Checks of Coalescent Models (Version 0.7.6) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=P2C2M

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for P2C2M version 0.7.6 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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