R Observatory: Metrics for OpEnHiMR version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OpEnHiMR

0.1.1

Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice

0packages depend

5.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Dipro SinhaFirst published 2024-05-262 releasesCRAN page ↗

The comprehensive knowledge of epigenetic modifications in plants, encompassing histone modifications in regulating gene expression, is not completely ingrained. It is noteworthy that histone deacetylation and histone H3 lysine 27 trimethylation (H3K27me3) play a role in repressing transcription in eukaryotes. In contrast, histone acetylation (H3K9ac) and H3K4me3 have been inevitably linked to the stimulation of gene expression, which significantly influences plant development and plays a role in plant responses to biotic and abiotic stresses. To our knowledge this the first multiclass classifier for predicting histone modification in plants. doi:10.1186/s12864-019-5489-4.

Install

R (CRAN)Ubuntu (r2u)

install.packages("OpEnHiMR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-openhimr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 5.2 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

16

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

5.9K

CRAN downloads in the past year

Rank #7,663 · ~16/day · ~488/mo

Releases R versions

Daily download trend is not available in this view yet.

22430 days

1.1K90 days

5.9K1 year

Compare downloads with other packages →

Also on95 r2u

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (16)

Biostrings devtools tidyverse seqinr splitstackshape entropy party e1071 caret randomForest gbmstatsstringr ftrCOOL dplyr RCurl

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (10)

Maintainer (1)

Dipro Sinha

Author, Maintainer

Authors (10)

Dipro Sinha

Author, Maintainer

Sunil Archak

Author

Sougata Bhattacharjee

Author

Neeraj Budhlakoti

Author

Saikath Das

Author

Girish Kumar Jha

Author

Dwijesh Chandra Mishra

Author

Sneha Murmu

Author

Sudhir Srivastava

Author

Md Yeasin

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
2024-05-30 · current release · diff ↗
0.1.0
2024-05-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-05-26
Total releases: 2 / 2 yrs
License: GPL-3 OSI
Download size: 6.4 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OpEnHiMR")

Format

Sinha, D., Archak, S., Bhattacharjee, S., Budhlakoti, N., Das, S., Jha, G. K., Mishra, D. C., Murmu, S., Srivastava, S., & Yeasin, M. (2024). OpEnHiMR: Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.OpEnHiMR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OpEnHiMR version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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