OmicFlow
Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description
A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user, which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class. Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 4.4Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
libs 4.5Mb
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 16, 2026
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 4.4Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
libs 4.5Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 12, 2026
package dependencies
Package required but not available: ‘rhdf5’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 4.4Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
libs 4.5Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 4.4Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
libs 4.5Mb