R Observatory: Metrics for OTrecod version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OTrecod

0.1.2Package record

Data Fusion using Optimal Transportation Theory

0packages depend

2.7Kdownloads / year

80.7%test coverage

0/13flavors OK

Overview

About

Maintained by Gregory GuernecCRAN page ↗

In the context of data fusion, the package provides a set of functions dedicated to the solving of 'recoding problems' using optimal transportation theory (Gares, Guernec, Savy (2019) doi:10.1515/ijb-2018-0106 and Gares, Omer (2020) doi:10.1080/01621459.2020.1775615). From two databases with no overlapping part except a subset of shared variables, the functions of the package assist users until obtaining a unique synthetic database, where the missing information is fully completed.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OTrecod", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-otrecod

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OTrecod

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OTrecod

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) imput_cov.Rd:79: Lost braces
    79 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                     ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                                                   ^
checkRd: (-1) merge_dbs.Rd:179: Lost braces
   179 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^

CRAN check page ↗

Slowest check: 8.6 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTE2026-07-13
ERROR11 NOTE, 2 ERROR2026-06-12
NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08
NOTE13 NOTE2026-05-02

Show 2 earlier changesHide 2 earlier changes

ERROR11 NOTE, 1 ERROR2026-04-25
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMEYes · 1,063 wordsVignettesYes · 2 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 23
Examples that run: 100%17 run in a plain check
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 65%

Vignettes (2)

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #15,079 · ~8/day · ~229/mo

Releases R versions

Daily download trend is not available in this view yet.

30830 days

80390 days

2.7K1 year

Compare downloads with other packages →

Also on92 r2u4 autocran36 c2d4u

How downloads are counted

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing OTrecod adds 154 packages (80 with compiled code, 124 MB of source tarballs). Heaviest: stringi 11 MB, TH.data 8.2 MB, ggplot2 6.0 MB.

Depends (1)

R >= 3.5

Imports (15)

statsdplyr mice missMDA plyr FactoMineR StatMatch proxy rdist ROI ROI.plugin.glpk ompr ompr.roi party vcd

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (6)

Gregory Guernec

Author, Maintainer since 0.1.0 (2021)

Valerie Gares

Author

Pierre Navaro

Contributor

Jeremy Omer

Contributor

Philippe Saint-Pierre

Contributor

Nicolas Savy

Contributor

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.2Latest
record
2022-10-05 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.1
record
2021-09-20 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.0
record
2021-01-29
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-01-29
Total releases: 3 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 109 KB / 6 files
Download size: 357 KB

Appears in task views

Missing Data

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OTrecod")

Format

Guernec, G., Gares, V., Navaro, P., Omer, J., Saint-Pierre, P., & Savy, N. (2022). OTrecod: Data Fusion using Optimal Transportation Theory (Version 0.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.OTrecod

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OTrecod version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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