R Observatory: Metrics for MiDA version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-03-31. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 0.1.2, its last release before removal.

MiDA

0.1.2

Microarray Data Analysis

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Elena Filatova2 releasesCRAN page ↗

Set of functions designed to simplify transcriptome analysis and identification of marker molecules using microarrays data. The package includes a set of functions that allows performing full pipeline of analysis including data normalization, summarisation, binary classification, FDR (False Discovery Rate) multiple comparison and the definition of potential biological markers.

Install

R (source archive)Ubuntu (r2u)

url <- "https://cran.r-project.org/src/contrib/Archive/MiDA/MiDA_0.1.2.tar.gz"
pkgFile <- "MiDA_0.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mida

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

9

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 21%

Downloads

MiDA Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on85 r2u

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (9)

caret gbm genefiltergraphicslimma preprocessCore pROCstatsSQN

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Elena Filatova

Author, Maintainer

Authors (1)

Elena Filatova

Author, Maintainer

Funders (1)

Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod, Russia

Funder

Other (3)

Nikolai Sakharnov

Data contributor

Dmitry Knyazev

Data contributor

Oleg Utkin

Data contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2025-03-31
email to the maintainer is undeliverable
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.1.2
2019-04-18 · diff ↗
0.1.0
2019-03-04
R
R 3.5.0 released · 2018-04-23

Package metadata

Total releases: 2
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 67 KB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MiDA")

Format

Filatova, E., Sakharnov, N., Knyazev, D., Utkin, O., & Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod, Russia. (n.d.). MiDA: Microarray Data Analysis (Version 0.1.2) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=MiDA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MiDA version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →