R Observatory: Metrics for MethodOpt version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MethodOpt

1.0.0Package record

Advanced Method Optimization for Spectra-Generating Sampling and Analysis Instrumentation

0packages depend

2.2Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Stephanie GambleCRAN page ↗

A graphical user interface to apply an advanced method optimization algorithm to various sampling and analysis instruments. This includes generating experimental designs, uploading and viewing data, and performing various analyses to determine the optimal method. Details of the techniques used in this package are published in Gamble, Granger, & Mannion (2024) doi:10.1021/acs.analchem.3c05763.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MethodOpt", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-methodopt

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MethodOpt

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MethodOpt

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespace in Imports field not imported from:
  ‘shinyBS’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-09-08
ERROR11 OK, 1 NOTE, 1 ERROR2026-09-07
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 10 (1 internal)
Examples that run: 0%1 hold no code
Exported functions with examples: 50%
Documented parameters: not tracked
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

MethodOpt: A graphical user interface for advanced method optimization HTML

How these are measured

Downloads

2.2K

CRAN downloads in the past year

Rank #21,448 · ~6/day · ~187/mo

Releases R versions

Daily download trend is not available in this view yet.

23130 days

61990 days

2.2K1 year

Compare downloads with other packages →

Also on75 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Installing MethodOpt adds 91 packages (45 with compiled code, 63 MB of source tarballs). Heaviest: ggplot2 6.0 MB, bslib 5.6 MB, igraph 4.8 MB.

Depends (1)

magrittr

Imports (19)

shiny shinyFeedback shinyalert (>= 3.0.0)htmltools FrF2 DT ggplot2statsdplyr shinyjs tibble glue rlang (>= 1.1.2)DoE.wrapper gtools zip (>= 2.3.0)zoo purrr shinyBS

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Stephanie Gamble

Author, Maintainer since 1.0.0 (2024)

Benjamin Luke

Author

Battelle Savannah River Alliance

Copyright holder

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0.0Latest
record
2024-09-30 · current release
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-09-30
Total releases: 1 / 2 yrs
License: GPL (>= 3) OSI
Download size: 1.5 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MethodOpt")

Format

Gamble, S., Battelle Savannah River Alliance, & Luke, B. (2024). MethodOpt: Advanced Method Optimization for Spectra-Generating Sampling and Analysis Instrumentation (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.MethodOpt

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MethodOpt version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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