R Observatory: Metrics for MetabolAnalyze version 1.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MetabolAnalyze

1.3.1

Probabilistic Latent Variable Models for Metabolomic Data

1packages depend

4.2Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Claire GormleyFirst published 2010-06-186 releasesCRAN page ↗

Fits probabilistic principal components analysis, probabilistic principal components and covariates analysis and mixtures of probabilistic principal components models to metabolomic spectral data.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MetabolAnalyze", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-metabolanalyze

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MetabolAnalyze

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MetabolAnalyze

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.2 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

5

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 86%

Downloads

4.2K

CRAN downloads in the past year

Rank #9,571 · ~12/day · ~353/mo

Releases R versions

Daily download trend is not available in this view yet.

27830 days

99290 days

4.2K1 year

Compare downloads with other packages →

Also on125 r2u29 autocran

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (5)

mclust mvtnorm ellipse gtools gplots

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

MetSizeR

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Lorraine Brennan.

no longer listed · 1.0 to 1.3.1

Nyamundanda Gift

no longer listed · 1.0 to 1.3.1

Isobel Claire Gormley

no longer listed · 1.0 to 1.3.1

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.3.1Latest
2019-08-31 · current release · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
1.3
2012-08-29 · diff ↗

Show 9 earlier events

R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
1.2
2010-09-06 · diff ↗
1.1
2010-07-07 · diff ↗
1.0
2010-06-18 · diff ↗
1.3-dup
2010-05-12
R
R 2.11.0 released · 2010-04-22

Package metadata

First published: 2010-06-18
Total releases: 6 / 16 yrs
License: GPL-2 OSI
Bundled data: 68 KB / 2 files
Download size: 92 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Cluster Analysis & Finite Mixture Models

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MetabolAnalyze")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MetabolAnalyze version 1.3.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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