R Observatory: Metrics for JLPM version 1.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

JLPM

1.0.4Package record

Joint Latent Process Models

0packages depend

3.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Viviane PhilippsCRAN page ↗GitHub ↗Website ↗Issues ↗

Estimation of extended joint models with shared random effects. Longitudinal data are handled in latent process models for continuous (Gaussian or curvilinear) and ordinal outcomes while proportional hazard models are used for the survival part. We propose a frequentist approach using maximum likelihood estimation. See Saulnier et al, 2022 doi:10.1016/j.ymeth.2022.03.003.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("JLPM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("VivianePhilipps/JLPM")

Development version from VivianePhilipps/JLPM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jlpm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-JLPM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-JLPM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.2 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-05-06
NOTE12 OK, 1 NOTE2026-05-05
ERROR11 NOTE, 2 ERROR2026-04-28

Show 1 earlier changeHide 1 earlier change

NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.4

READMEYes · 31 wordsVignettes· In the repository, left out of the releaseNEWSNoCitation fileNoWebsiteYes · pkgdown

Help pages: 18includes a package overview page
Examples that run: 100%4 run in a plain check
Exported functions with examples: 31%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 22%

How these are measured

Downloads

3.1K

CRAN downloads in the past year

Rank #19,108 · ~9/day · ~259/mo

Releases R versions

Daily download trend is not available in this view yet.

28530 days

68390 days

3.1K1 year

Compare downloads with other packages →

Also on366 r2u3 autocran

How downloads are counted

Repository

vivianephilipps/jlpm ↗Account: VivianePhilipps

1Stars

1Forks

0Open issues

0Open PRs

0Releases

88Commits

4Commit identities

88 commits · Last activity 2026-07-16 · 0% stars, 30d

Responsiveness

not measured

Stars over time

2025-12-28 · 12026-07-07 · 1

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/vivianephilipps/jlpm on 2026-10-18.

Docs source (2)

pkgdown

GitHub Pages site last deployed 2026-07-16

pkgdown site last built 2026-04-30, before release 1.0.4 (2026-05-04)

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing JLPM adds 17 packages (11 with compiled code, 21 MB of source tarballs). Heaviest: stringi 11 MB, spacefillr 3.1 MB, Rcpp 1.8 MB.

Depends (2)

R >= 3.5.0lcmm

Imports (4)

survivalspacefillr stringr marqLevAlg (>= 2.0.6)

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Viviane Philipps

Author, Maintainer since 1.0.1 (2022)

Cecile Proust-Lima

Author

Tiphaine Saulnier

Author

Releases (4)

Pick two releases to compare their code metrics.

1.0.4Latest
record
2026-05-04 · current release · diff ↗
1.0.3
record
2026-04-27 · diff ↗ ·
added 12 exports
IRT4Sselecting, IRT4Sstaging, REconddensity, WaldMult, convert, createFargs, createX0, diffSojournTime, loglik, predictRE, removeNA, sojournTime
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.2
record
2023-10-06 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.1
record
2022-03-31
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-03-31
Total releases: 4 / 4 yrs
License: GPL (>= 2.0)
Minimum R: ≥ 3.5.0
Download size: 97 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("JLPM")

Format

Philipps, V., Proust-Lima, C., & Saulnier, T. (2026). JLPM: Joint Latent Process Models (Version 1.0.4) [Computer software]. https://doi.org/10.32614/CRAN.package.JLPM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for JLPM version 1.0.4 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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