R Observatory: Metrics for HybridMicrobiomes version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HybridMicrobiomes

0.1.1

Analysis of Host-Associated Microbiomes from Hybrid Organisms

0packages depend

2.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Sharon BewickFirst published 2023-05-042 releasesCRAN page ↗

A set of tools to analyze and visualize the relationships between host-associated microbiomes of hybrid organisms and those of their progenitor species. Though not necessary, installing the microViz package is recommended as a check for phyloseq objects. To install microViz from R Universe use the following command: install.packages("microViz", repos = c(davidbarnett = "https://david-barnett.r-universe.dev", getOption("repos"))). To install microViz from GitHub use the following commands: install.packages("devtools") followed by devtools::install_github("david-barnett/microViz").

Install

R (CRAN)Ubuntu (r2u)

install.packages("HybridMicrobiomes", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hybridmicrobiomes

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 7.1 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

12

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 4 earlier snapshots

NOTE2026-03-16
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-13
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-12
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 80%

Downloads

2.3K

CRAN downloads in the past year

Rank #19,066 · ~6/day · ~192/mo

Releases R versions

Daily download trend is not available in this view yet.

20030 days

59490 days

2.3K1 year

Compare downloads with other packages →

Also on99 r2u

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (12)

rgl compositions rlang PERMANOVAgraphicsstatsvegan ks ape geometry StereoMorph phyloseq

LinkingTo (0)

none

Suggests (1)

microViz

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (7)

Maintainer (1)

Sharon Bewick

Author, Maintainer

Authors (2)

Sharon Bewick

Author, Maintainer

Benjamin Camper

Author

Contributors (3)

Robert Denton

Contributor

Zachary Lauglin

Contributor

Daniel Malagon

Contributor

Funders (2)

Clemson University Support for Early Exploration and Development (CU SEED) Grant

Funder

National Science Foundation Division of Integrative Organismal Systems (award #2104605)

Funder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.1Latest
2023-12-06 · current release · diff ↗
0.1.0
2023-05-04
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-05-04
Total releases: 2 / 3 yrs
License: GPL-2 OSI
Download size: 22 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HybridMicrobiomes")

Format

Bewick, S., Clemson University Support for Early Exploration and Development (CU SEED) Grant, National Science Foundation Division of Integrative Organismal Systems (award #2104605), Camper, B., Denton, R., Lauglin, Z., & Malagon, D. (2023). HybridMicrobiomes: Analysis of Host-Associated Microbiomes from Hybrid Organisms (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.HybridMicrobiomes

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HybridMicrobiomes version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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