GROAN

1.3.1

Genomic Regression Workbench

0packages depend

2.8Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Nelson NazzicariFirst published 2017-07-126 releasesCRAN page ↗

Workbench for testing genomic regression accuracy on (optionally noisy) phenotypes.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GROAN", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-groan

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GROAN

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GROAN

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 181 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 64%
Documented parameters: 97%
Return-value docs: 100%
References docs: 0%

Downloads

2.8K

CRAN downloads in the past year

Rank #14,846 · ~8/day · ~235/mo

Releases R versions

Daily download trend is not available in this view yet.

22030 days

75090 days

2.8K1 year

Compare downloads with other packages →

Also on89 r2u31 autocran

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (2)

plyr rrBLUP

LinkingTo (0)

none

Suggests (6)

BGLR e1071 ggplot2 knitr randomForest rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,189 (59%)Rd 1,711 (32%)Vignettes 505 (9%)

Code characteristics

Object systems

S34

Cyclomatic complexity: 3.0 median / 29 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

61 21 exported

Complexity

3.8 avg / 29 max

Call network

61 nodes / 49 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 3

Name	Class	Rows × Cols	Also ships in
GROAN.pea.SNPs	data.frame	103 × 647	–
GROAN.pea.kinship	data.frame	103 × 103	–
GROAN.pea.yield	vector	–	–

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Nelson Nazzicari & Filippo Biscarini

no longer listed · 1.0.0 to 1.3.1

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.3.1Latest
2022-11-28 · current release · diff ↗
1.3.0
2022-08-26 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.2.1
2021-04-28 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.2.0
2018-10-11 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1.0
2017-10-07 · diff ↗
1.0.0
2017-07-12
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-07-12
Total releases: 6 / 9 yrs
License: GPL-3 | file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 210 KB / 5 files
Download size: 682 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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