R Observatory: Metrics for GHRmodel version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GHRmodel

0.1.1Package record

Bayesian Hierarchical Modelling of Spatio-Temporal Health Data

0packages depend

2.7Kdownloads / year

63.0%test coverage

13/13flavors OK

Overview

About

Maintained by Carles MilàCRAN page ↗Repository ↗Website ↗Issues ↗

Supports modeling health outcomes using Bayesian hierarchical spatio-temporal models with complex covariate effects (e.g., linear, non-linear, interactions, distributed lag linear and non-linear models) in the 'INLA' framework. It is designed to help users identify key drivers and predictors of disease risk by enabling streamlined model exploration, comparison, and visualization of complex covariate effects. See an application of the modelling framework in Lowe, Lee, O'Reilly et al. (2021) doi:10.1016/S2542-5196(20)30292-8.

Changes in 0.1.1

Fixed bug in the colour scale in the function plot_coef_crosspred().
Minor updates in the documentation.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GHRmodel", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ghrmodel

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GHRmodel

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GHRmodel

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 10.9 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25

Show 1 earlier changeHide 1 earlier change

NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMEYes · 516 wordsVignettesYes · 3 · dynamicNEWSYes · 100% structured · mentions 0.1.1Citation fileNoWebsiteYes

Help pages: 31 (1 internal)includes a package overview page
Examples that run: 56%15 run in a plain check · 12 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 96%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (3)

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #15,313 · ~8/day · ~228/mo

Releases R versions

Daily download trend is not available in this view yet.

31430 days

79690 days

2.7K1 year

Compare downloads with other packages →

Also on134 r2u6 autocran

How downloads are counted

Repository

gitlab.earth.bsc.es/ghr/ghrmodel ↗

0Stars

0Forks

0Open issues

1Open PRs

0Releases

479Commits

3Commit identities

License file reads as GPL-2.0 · 479 commits · Last activity 2026-05-22

Responsiveness

How these are sampled

PRs merged (all time): 90%
Median days to close, 50 most recently updated closed issues: GitHub only
Median days to close, 50 most recently updated closed PRs: GitHub only

How these are measured

PracticesBeta

Repository gitlab.earth.bsc.es/ghr/ghrmodel is linked, but repository-practices checks have not run for it yet. Checks are GitHub-only for now.

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing GHRmodel adds 36 packages (18 with compiled code, 37 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, GHRexplore 3.8 MB.

Depends (1)

R >= 4.1.0

Imports (9)

cowplot dlnm dplyr ggplot2 GHRexplore rlang scales tidyr tidyselect

LinkingTo (0)

none

Suggests (9)

INLA sf sn RColorBrewer colorspace testthat spdep knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Carles Milà

Author, Maintainer since 0.1.0 (2025)

Anna B. Kawiecki

Author

Rachel Lowe

Author

Giovenale Moirano

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.1.1Latest
record
2025-11-07 · current release · diff ↗
0.1.0
record
2025-10-21
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-21
Total releases: 2 / 1 yrs
License: GPL (>= 2) OSI
Additional repositories: inla.r-inla-download.org
Minimum R: ≥ 4.1.0
Bundled data: 87 KB / 3 files
Download size: 6.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GHRmodel")

Format

Milà, C., Kawiecki, A. B., Lowe, R., & Moirano, G. (2025). GHRmodel: Bayesian Hierarchical Modelling of Spatio-Temporal Health Data (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.GHRmodel

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GHRmodel version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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