R Observatory: Metrics for EpiReport version 1.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EpiReport

1.0.4Package record

Epidemiological Report

0packages depend

3.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Lore MerdrignacCRAN page ↗Website ↗Declared funders: Joana Gomes Dias and Tommi Karki

Drafting an epidemiological report in 'Microsoft Word' format for a given disease, similar to the Annual Epidemiological Reports published by the European Centre for Disease Prevention and Control. Through standalone functions, it is specifically designed to generate each disease specific output presented in these reports and includes: - Table with the distribution of cases by Member State over the last five years; - Seasonality plot with the distribution of cases at the European Union / European Economic Area level, by month, over the past five years; - Trend plot with the trend and number of cases at the European Union / European Economic Area level, by month, over the past five years; - Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level. Two types of datasets can be used: - The default dataset of dengue 2015-2019 data; - Any dataset specified as described in the vignette.

Changes in 1.0.4

NEW FEATURE

Adding pkgdown page

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EpiReport", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epireport

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EpiReport

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EpiReport

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.4

READMEYes · 179 wordsVignettesYes · 1 · dynamicNEWSYes · 33% structured · mentions 1.0.4Citation fileNoWebsiteYes · pkgdown

Help pages: 32
Examples that run: 92%22 run in a plain check · 2 never run
Exported functions with examples: 86%
Documented parameters: 91%
Return-value docs: 54%
Help pages citing references: 0%

Vignettes (1)

The 'Epidemiological Report' Package

How these are measured

Downloads

3.9K

CRAN downloads in the past year

Rank #7,733 · ~11/day · ~323/mo

Releases R versions

Daily download trend is not available in this view yet.

45330 days

1.2K90 days

3.9K1 year

Compare downloads with other packages →

Also on112 r2u7 autocran101 c2d4u

How downloads are counted

Repository

epiconcept-paris/epireport ↗Organization: Epiconcept-ParisFork of EU-ECDC/EpiReport

1Stars

0Forks

0Open PRs

8Releases

146Commits

6Commit identities

License file reads as EUPL-1.2 · 146 commits · Last activity 2025-05-02 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 90%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-10-09 · 12026-07-07 · 1

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/epiconcept-paris/epireport on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2025-05-02 · The repository has a site deploy workflow

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing EpiReport adds 69 packages (41 with compiled code, 64 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 3.5.0

Imports (8)

officer flextable zoo png dplyr tidyr tidyselect ggplot2

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Lore Merdrignac

Author, Contractor, Maintainer since 0.1.0 (2018)

Author of the package and original code

Joana Gomes Dias

Author, Funder

Project manager

Tommi Karki

Author, Funder

Esther Kissling

Author, Contractor

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.4Latest
record
2025-05-02 · current release · diff ↗
1.0.3
record
2025-04-18 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.2
record
2021-07-05 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.1
record
2021-02-04 · diff ↗
1.0.0
record
2021-01-06 · diff ↗ ·
added 9 exports
EcdcColors, body_replace_gg_at_bkm, plotBar, plotBarGrouped, plotBarGroupedH, plotBarH, plotPie, plotTS, plotTSGrouped
0.1.1
record
2020-05-11 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.1.0
record
2018-11-14
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-11-14
Total releases: 7 / 8 yrs
License: EUPL
Minimum R: ≥ 3.5.0
Bundled data: 358 KB / 4 files
Download size: 3.5 MB

Appears in task views

Epidemiology

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EpiReport")

Format

Merdrignac, L., Gomes Dias, J., Karki, T., & Kissling, E. (2025). EpiReport: Epidemiological Report (Version 1.0.4) [Computer software]. https://doi.org/10.32614/CRAN.package.EpiReport

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EpiReport version 1.0.4 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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